Literature DB >> 22700963

Insights into processing and cyclization events associated with biosynthesis of the cyclic Peptide kalata B1.

Brendon F Conlan1, Michelle L Colgrave, Amanda D Gillon, Rosemary Guarino, David J Craik, Marilyn A Anderson.   

Abstract

Plant cyclotides are the largest family of gene-encoded cyclic proteins. They act as host defense molecules to protect plants and are promising candidates as insecticidal and nematocidal agents in agriculture. For this promise to be realized a greater understanding of the post-translational processing of these proteins is needed. Cyclotides are cleaved from precursor proteins with subsequent ligation of the N and C termini to form a continuous peptide backbone. This cyclization step is inefficient in transgenic plants and our work aims to shed light on the specificity requirements at the excision sites for cyclic peptide production. Using the prototypic cyclotide kalata B1 (kB1) expressed from the Oak1 gene, MALDI-TOF mass spectrometry was used to examine the cyclization efficiency when mutants of the Oak1 gene were expressed in transgenic Nicotiana benthamiana. Cleavage at the N terminus of the cyclotide domain occurs rapidly with no strict specificity requirements for amino acids at the cleavage site. In contrast, the C-terminal region of the cyclotide domain in the P2, P1, P1', and P2' positions is highly conserved and only specific amino acids can occupy these positions. The cyclization reaction requires an Asn at position P1 followed by a small amino acid (Ala, Gly, Ser) at the P1' position. The P2' position must be filled by Leu or Ile; in their absence an unusual post-translational modification occurs. Substitution of the P2' Leu with Ala leads to hydroxylation of the neighboring proline. Through mutational analysis this novel proline hydroxylation motif was determined to be Gly-Ala-Pro-Ser.

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Year:  2012        PMID: 22700963      PMCID: PMC3431668          DOI: 10.1074/jbc.M112.347823

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

1.  Conserved structural and sequence elements implicated in the processing of gene-encoded circular proteins.

Authors:  Julie L Dutton; Rosemary F Renda; Clement Waine; Richard J Clark; Norelle L Daly; Cameron V Jennings; Marilyn A Anderson; David J Craik
Journal:  J Biol Chem       Date:  2004-08-24       Impact factor: 5.157

Review 2.  Circular proteins and mechanisms of cyclization.

Authors:  Brendon F Conlan; Amanda D Gillon; David J Craik; Marilyn A Anderson
Journal:  Biopolymers       Date:  2010       Impact factor: 2.505

3.  Discovery, structural determination, and putative processing of the precursor protein that produces the cyclic trypsin inhibitor sunflower trypsin inhibitor 1.

Authors:  Jason P Mulvenna; Fiona M Foley; David J Craik
Journal:  J Biol Chem       Date:  2005-07-21       Impact factor: 5.157

4.  Albumins and their processing machinery are hijacked for cyclic peptides in sunflower.

Authors:  Joshua S Mylne; Michelle L Colgrave; Norelle L Daly; Aurelie H Chanson; Alysha G Elliott; Emily J McCallum; Alun Jones; David J Craik
Journal:  Nat Chem Biol       Date:  2011-03-20       Impact factor: 15.040

5.  Analysis and classification of circular proteins in CyBase.

Authors:  Quentin Kaas; David J Craik
Journal:  Biopolymers       Date:  2010       Impact factor: 2.505

6.  Subcellular targeting and biosynthesis of cyclotides in plant cells.

Authors:  Brendon F Conlan; Amanda D Gillon; Barbara L Barbeta; Marilyn A Anderson
Journal:  Am J Bot       Date:  2011-11-11       Impact factor: 3.844

7.  Engineering kunitz domain 1 (KD1) of human tissue factor pathway inhibitor-2 to selectively inhibit fibrinolysis: properties of KD1-L17R variant.

Authors:  Madhu S Bajaj; Godwin I Ogueli; Yogesh Kumar; Kanagasabai Vadivel; Gregory Lawson; Sreejesh Shanker; Amy E Schmidt; S Paul Bajaj
Journal:  J Biol Chem       Date:  2010-11-29       Impact factor: 5.157

Review 8.  The cyclotides: novel macrocyclic peptides as scaffolds in drug design.

Authors:  David J Craik; Shane Simonsen; Norelle L Daly
Journal:  Curr Opin Drug Discov Devel       Date:  2002-03

9.  Experimental determination of proline hydroxylation and hydroxyproline arabinogalactosylation motifs in secretory proteins.

Authors:  Masami Shimizu; Tomohiro Igasaki; Makiko Yamada; Koji Yuasa; Jyunko Hasegawa; Tetsuji Kato; Hironaka Tsukagoshi; Kenzo Nakamura; Hiroo Fukuda; Ken Matsuoka
Journal:  Plant J       Date:  2005-06       Impact factor: 6.417

10.  A novel plant protein-disulfide isomerase involved in the oxidative folding of cystine knot defense proteins.

Authors:  Christian W Gruber; Masa Cemazar; Richard J Clark; Tomohisa Horibe; Rosemary F Renda; Marilyn A Anderson; David J Craik
Journal:  J Biol Chem       Date:  2007-05-22       Impact factor: 5.157

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  15 in total

1.  Butelase 1 is an Asx-specific ligase enabling peptide macrocyclization and synthesis.

Authors:  Giang K T Nguyen; Shujing Wang; Yibo Qiu; Xinya Hemu; Yilong Lian; James P Tam
Journal:  Nat Chem Biol       Date:  2014-07-20       Impact factor: 15.040

2.  Cyclotide discovery in Gentianales revisited--identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants.

Authors:  Johannes Koehbach; Alfred F Attah; Andreas Berger; Roland Hellinger; Toni M Kutchan; Eric J Carpenter; Megan Rolf; Mubo A Sonibare; Jones O Moody; Gane Ka-Shu Wong; Steven Dessein; Harald Greger; Christian W Gruber
Journal:  Biopolymers       Date:  2013-09       Impact factor: 2.505

Review 3.  Plant asparaginyl endopeptidases and their structural determinants of function.

Authors:  Samuel G Nonis; Joel Haywood; Joshua S Mylne
Journal:  Biochem Soc Trans       Date:  2021-04-30       Impact factor: 5.407

4.  Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining.

Authors:  Roland Hellinger; Johannes Koehbach; Douglas E Soltis; Eric J Carpenter; Gane Ka-Shu Wong; Christian W Gruber
Journal:  J Proteome Res       Date:  2015-10-08       Impact factor: 4.466

5.  Efficient backbone cyclization of linear peptides by a recombinant asparaginyl endopeptidase.

Authors:  Karen S Harris; Thomas Durek; Quentin Kaas; Aaron G Poth; Edward K Gilding; Brendon F Conlan; Ivana Saska; Norelle L Daly; Nicole L van der Weerden; David J Craik; Marilyn A Anderson
Journal:  Nat Commun       Date:  2015-12-18       Impact factor: 14.919

6.  Co-expression of a cyclizing asparaginyl endopeptidase enables efficient production of cyclic peptides in planta.

Authors:  Simon Poon; Karen S Harris; Mark A Jackson; Owen C McCorkelle; Edward K Gilding; Thomas Durek; Nicole L van der Weerden; David J Craik; Marilyn A Anderson
Journal:  J Exp Bot       Date:  2018-01-23       Impact factor: 6.992

7.  Structural analyses of Arabidopsis thaliana legumain γ reveal differential recognition and processing of proteolysis and ligation substrates.

Authors:  Florian B Zauner; Brigitta Elsässer; Elfriede Dall; Chiara Cabrele; Hans Brandstetter
Journal:  J Biol Chem       Date:  2018-04-08       Impact factor: 5.157

Review 8.  Plant derived cyclic peptides.

Authors:  Norelle L Daly; David T Wilson
Journal:  Biochem Soc Trans       Date:  2021-06-30       Impact factor: 5.407

9.  Expression and biological activity of the cystine knot bioinsecticide PA1b (Pea Albumin 1 Subunit b).

Authors:  Vanessa Eyraud; Lamis Karaki; Isabelle Rahioui; Catherine Sivignon; Pedro Da Silva; Yvan Rahbé; Corinne Royer; Frédéric Gressent
Journal:  PLoS One       Date:  2013-12-11       Impact factor: 3.240

10.  Making ends meet: chemically mediated circularization of recombinant proteins.

Authors:  Ben Cowper; David J Craik; Derek Macmillan
Journal:  Chembiochem       Date:  2013-04-04       Impact factor: 3.164

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