Literature DB >> 22698383

Sequence specific DNA cross-linking triggered by visible light.

Marieke Op de Beeck1, Annemieke Madder.   

Abstract

A new biocompatible strategy for photoinduced DNA interstrand cross-linking is presented. Methylene blue induced (1)O(2) formation triggers furan oxidation; the resulting aldehyde then rapidly reacts with complementary A or C with formation of stable adducts. Easily accessible furan modified nucleosides, a commercially available photosensitizer, and visible light irradiation constitute the necessary tools to achieve selective duplex interstrand cross-linking.

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Year:  2012        PMID: 22698383     DOI: 10.1021/ja301901p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Photochemical Generation of Benzyl Cations That Selectively Cross-Link Guanine and Cytosine in DNA.

Authors:  Yibin Wang; Shuo Liu; Zechao Lin; Yukai Fan; Yinsheng Wang; Xiaohua Peng
Journal:  Org Lett       Date:  2016-05-18       Impact factor: 6.005

Review 2.  Genetic code expansion as a tool to study regulatory processes of transcription.

Authors:  Moritz J Schmidt; Daniel Summerer
Journal:  Front Chem       Date:  2014-02-25       Impact factor: 5.221

3.  Remarkable acceleration of a DNA/RNA inter-strand functionality transfer reaction to modify a cytosine residue: the proximity effect via complexation with a metal cation.

Authors:  Daichi Jitsuzaki; Kazumitsu Onizuka; Atsushi Nishimoto; Ikuya Oshiro; Yosuke Taniguchi; Shigeki Sasaki
Journal:  Nucleic Acids Res       Date:  2014-06-23       Impact factor: 16.971

4.  Photouncaged Sequence-specific Interstrand DNA Cross-Linking with Photolabile 4-oxo-enal-modified Oligonucleotides.

Authors:  Jingjing Sun; Xinjing Tang
Journal:  Sci Rep       Date:  2015-05-28       Impact factor: 4.379

Review 5.  A Photosensitized Singlet Oxygen (1O2) Toolbox for Bio-Organic Applications: Tailoring 1O2 Generation for DNA and Protein Labelling, Targeting and Biosensing.

Authors:  Dorien Aerssens; Enrico Cadoni; Laure Tack; Annemieke Madder
Journal:  Molecules       Date:  2022-01-25       Impact factor: 4.411

6.  Synthesis and structure-activity relationship of peptide nucleic acid probes with improved interstrand-crosslinking abilities: application to biotin-mediated RNA-pulldown.

Authors:  Enrico Cadoni; Francesca Pennati; Penthip Muangkaew; Joke Elskens; Annemieke Madder; Alex Manicardi
Journal:  RSC Chem Biol       Date:  2022-07-21

7.  Visible-light triggered templated ligation on surface using furan-modified PNAs.

Authors:  Alex Manicardi; Enrico Cadoni; Annemieke Madder
Journal:  Chem Sci       Date:  2020-10-09       Impact factor: 9.825

8.  4-vinyl-substituted pyrimidine nucleosides exhibit the efficient and selective formation of interstrand cross-links with RNA and duplex DNA.

Authors:  Atsushi Nishimoto; Daichi Jitsuzaki; Kazumitsu Onizuka; Yosuke Taniguchi; Fumi Nagatsugi; Shigeki Sasaki
Journal:  Nucleic Acids Res       Date:  2013-06-18       Impact factor: 16.971

9.  Synthesis of cross-linked DNA containing oxidized abasic site analogues.

Authors:  Souradyuti Ghosh; Marc M Greenberg
Journal:  J Org Chem       Date:  2014-06-20       Impact factor: 4.354

  9 in total

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