Literature DB >> 22691796

Use of differential scanning fluorimetry to optimize the purification and crystallization of PLP-dependent enzymes.

Todd W Geders1, Kathryn Gustafson, Barry C Finzel.   

Abstract

Differential scanning fluorimetry (DSF) is a practical and accessible technique that allows the assessment of multiphasic unfolding behavior resulting from subsaturating binding of ligands. Multiphasic unfolding is indicative of a heterogenous protein solution, which frequently interferes with crystallization and complicates functional characterization of proteins of interest. Along with UV-Vis spectroscopy, DSF was used to guide purification and crystallization improvements for the pyridoxal 5'-phosphate (PLP) dependent transaminase BioA from Mycobacterium tuberculosis. The incompatibility of the primary amine-containing buffer 2-amino-2-(hydroxymethyl)-1,3-propanediol (Tris) and PLP was identified as a significant contributor to heterogeneity. It is likely that the utility of DSF for ligand-binding assessment is not limited to the cofactor PLP but will be applicable to a variety of ligand-dependent enzymes.

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Year:  2012        PMID: 22691796      PMCID: PMC3374521          DOI: 10.1107/S1744309112012912

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

3.  High-density miniaturized thermal shift assays as a general strategy for drug discovery.

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Journal:  J Biomol Screen       Date:  2001-12

4.  Origins and consequences of ligand-induced multiphasic thermal protein denaturation.

Authors:  A Shrake; P D Ross
Journal:  Biopolymers       Date:  1992-08       Impact factor: 2.505

5.  The effect of norepinephrine on the 5-hydroxytryptophan decarboxylase activity of rat kidney.

Authors:  J A BUZARD; P D NYTCH
Journal:  J Biol Chem       Date:  1959-04       Impact factor: 5.157

6.  Evaluation of fluorescence-based thermal shift assays for hit identification in drug discovery.

Authors:  Mei-Chu Lo; Ann Aulabaugh; Guixian Jin; Rebecca Cowling; Jonathan Bard; Michael Malamas; George Ellestad
Journal:  Anal Biochem       Date:  2004-09-01       Impact factor: 3.365

7.  Discovery and cocrystal structure of benzodiazepinedione HDM2 antagonists that activate p53 in cells.

Authors:  Bruce L Grasberger; Tianbao Lu; Carsten Schubert; Daniel J Parks; Theodore E Carver; Holly K Koblish; Maxwell D Cummings; Louis V LaFrance; Karen L Milkiewicz; Raul R Calvo; Diane Maguire; Jennifer Lattanze; Carol F Franks; Shuyuan Zhao; Kannan Ramachandren; Gwendolyn R Bylebyl; Marie Zhang; Carl L Manthey; Eugene C Petrella; Michael W Pantoliano; Ingrid C Deckman; John C Spurlino; Anna C Maroney; Bruce E Tomczuk; Christopher J Molloy; Roger F Bone
Journal:  J Med Chem       Date:  2005-02-24       Impact factor: 7.446

8.  Thermofluor-based high-throughput stability optimization of proteins for structural studies.

Authors:  Ulrika B Ericsson; B Martin Hallberg; George T Detitta; Niek Dekker; Pär Nordlund
Journal:  Anal Biochem       Date:  2006-08-10       Impact factor: 3.365

9.  The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability.

Authors:  Frank H Niesen; Helena Berglund; Masoud Vedadi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  7,8-Diaminoperlargonic acid aminotransferase from Mycobacterium tuberculosis, a potential therapeutic target. Characterization and inhibition studies.

Authors:  Stéphane Mann; Olivier Ploux
Journal:  FEBS J       Date:  2006-09-19       Impact factor: 5.542

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  11 in total

1.  Structure-Based Optimization of Pyridoxal 5'-Phosphate-Dependent Transaminase Enzyme (BioA) Inhibitors that Target Biotin Biosynthesis in Mycobacterium tuberculosis.

Authors:  Feng Liu; Surendra Dawadi; Kimberly M Maize; Ran Dai; Sae Woong Park; Dirk Schnappinger; Barry C Finzel; Courtney C Aldrich
Journal:  J Med Chem       Date:  2017-06-22       Impact factor: 7.446

2.  Inhibition of Mycobacterium tuberculosis transaminase BioA by aryl hydrazines and hydrazides.

Authors:  Ran Dai; Daniel J Wilson; Todd W Geders; Courtney C Aldrich; Barry C Finzel
Journal:  Chembiochem       Date:  2014-01-31       Impact factor: 3.164

3.  Target-based identification of whole-cell active inhibitors of biotin biosynthesis in Mycobacterium tuberculosis.

Authors:  Sae Woong Park; Dominick E Casalena; Daniel J Wilson; Ran Dai; Partha P Nag; Feng Liu; Jim P Boyce; Joshua A Bittker; Stuart L Schreiber; Barry C Finzel; Dirk Schnappinger; Courtney C Aldrich
Journal:  Chem Biol       Date:  2014-12-31

4.  Fragment-based exploration of binding site flexibility in Mycobacterium tuberculosis BioA.

Authors:  Ran Dai; Todd W Geders; Feng Liu; Sae Woong Park; Dirk Schnappinger; Courtney C Aldrich; Barry C Finzel
Journal:  J Med Chem       Date:  2015-06-24       Impact factor: 7.446

5.  Exploring Covalent Allosteric Inhibition of Antigen 85C from Mycobacterium tuberculosis by Ebselen Derivatives.

Authors:  Christopher M Goins; Steven Dajnowicz; Sandeep Thanna; Steven J Sucheck; Jerry M Parks; Donald R Ronning
Journal:  ACS Infect Dis       Date:  2017-03-21       Impact factor: 5.084

6.  Functional characterization of the HMP-P synthase of Legionella pneumophila (Lpg1565).

Authors:  Michael D Paxhia; Michele S Swanson; Diana M Downs
Journal:  Mol Microbiol       Date:  2020-11-03       Impact factor: 3.979

7.  Protein-ligand interactions investigated by thermal shift assays (TSA) and dual polarization interferometry (DPI).

Authors:  Morten K Grøftehauge; Nelly R Hajizadeh; Marcus J Swann; Ehmke Pohl
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-01

Review 8.  Theory and applications of differential scanning fluorimetry in early-stage drug discovery.

Authors:  Kai Gao; Rick Oerlemans; Matthew R Groves
Journal:  Biophys Rev       Date:  2020-01-31

9.  Structural insights into protein folding, stability and activity using in vivo perdeuteration of hen egg-white lysozyme.

Authors:  Joao Ramos; Valerie Laux; Michael Haertlein; Elisabetta Boeri Erba; Katherine E McAuley; V Trevor Forsyth; Estelle Mossou; Sine Larsen; Annette E Langkilde
Journal:  IUCrJ       Date:  2021-03-06       Impact factor: 4.769

10.  Determination of protein-ligand interactions using differential scanning fluorimetry.

Authors:  Mirella Vivoli; Halina R Novak; Jennifer A Littlechild; Nicholas J Harmer
Journal:  J Vis Exp       Date:  2014-09-13       Impact factor: 1.355

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