Literature DB >> 22689240

Genome sequence of a novel nicotine-degrading strain, Pseudomonas geniculata N1.

Hongzhi Tang1, Hao Yu, Cui Tai, Kaiming Huang, Yanghui Liu, Lijuan Wang, Yuxiang Yao, Geng Wu, Ping Xu.   

Abstract

A newly isolated bacterium, Pseudomonas geniculata N1, can efficiently degrade nicotine. Here we present a 4.51-Mb assembly of its genome, which is the first sequence of the P. geniculata group. The sequence contains the genes related to nicotine catabolism and may provide insights into its molecular mechanism for N-heterocyclic degradation.

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Year:  2012        PMID： 22689240      PMCID： PMC3434753          DOI： 10.1128/JB.00625-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  Microbiology and biochemistry of nicotine degradation.

Authors:  Roderich Brandsch
Journal:  Appl Microbiol Biotechnol       Date:  2005-12-07       Impact factor: 4.813

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  A novel NADH-dependent and FAD-containing hydroxylase is crucial for nicotine degradation by Pseudomonas putida.

Authors:  Hongzhi Tang; Yuxiang Yao; Dake Zhang; Xiangzhou Meng; Lijuan Wang; Hao Yu; Lanying Ma; Ping Xu
Journal:  J Biol Chem       Date:  2011-09-23       Impact factor: 5.157

5.  SmeC, an outer membrane multidrug efflux protein of Stenotrophomonas maltophilia.

Authors:  Xian-Zhi Li; Li Zhang; Keith Poole
Journal:  Antimicrob Agents Chemother       Date:  2002-02       Impact factor: 5.191

6.  Cloning and characterization of SmeDEF, a novel multidrug efflux pump from Stenotrophomonas maltophilia.

Authors:  A Alonso; J L Martínez
Journal:  Antimicrob Agents Chemother       Date:  2000-11       Impact factor: 5.191

7.  Fimbriae and adherence of Stenotrophomonas maltophilia to epithelial cells and to abiotic surfaces.

Authors:  Doroti de Oliveira-Garcia; Monique Dall'Agnol; Mónica Rosales; Ana C G S Azzuz; Norma Alcántara; Marina B Martinez; Jorge A Girón
Journal:  Cell Microbiol       Date:  2003-09       Impact factor: 3.715

8.  Novel nicotine oxidoreductase-encoding gene involved in nicotine degradation by Pseudomonas putida strain S16.

Authors:  Hongzhi Tang; Lijuan Wang; Xiangzhou Meng; Lanying Ma; Shuning Wang; Xiaofei He; Geng Wu; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2008-12-05       Impact factor: 4.792

9.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  5 in total

1.  Physiological and biochemical characterization of a novel nicotine-degrading bacterium Pseudomonas geniculata N1.

Authors:  Yanghui Liu; Lijuan Wang; Kaiming Huang; Weiwei Wang; Xueling Nie; Yi Jiang; Pengpeng Li; Shanshan Liu; Ping Xu; Hongzhi Tang
Journal:  PLoS One       Date:  2014-01-08       Impact factor: 3.240

2.  Draft Genome Sequence of Stenotrophomonas maltophilia Strain B418, a Promising Agent for Biocontrol of Plant Pathogens and Root-Knot Nematode.

Authors:  Yuanzheng Wu; Yilian Wang; Jishun Li; Jindong Hu; Kai Chen; Yanli Wei; Dmitry P Bazhanov; Alesia A Bazhanova; Hetong Yang
Journal:  Genome Announc       Date:  2015-02-19

Review 3.  Current status on biochemistry and molecular biology of microbial degradation of nicotine.

Authors:  Raman Gurusamy; Sakthivel Natarajan
Journal:  ScientificWorldJournal       Date:  2013-12-29

4.  Genome Sequence of a Newly Isolated Nicotine-Degrading Bacterium, Ochrobactrum sp. SJY1.

Authors:  Hao Yu; Yangyang Li; Hongzhi Tang; Ping Xu
Journal:  Genome Announc       Date:  2014-07-24

5.  Nano-metals forming bacteria in Egypt. I. Synthesis, characterization and effect on some phytopathogenic bacteria in vitro.

Authors:  Sahar Abd El-Fatah Zaki; Ayman Kamal; Nader A Ashmawy; Alia A Shoeib
Journal:  Sci Rep       Date:  2021-06-18       Impact factor: 4.379
  5 in total

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