Literature DB >> 22689238

Genome sequence of "Candidatus Aquiluna" sp. strain IMCC13023, a marine member of the Actinobacteria isolated from an arctic fjord.

Ilnam Kang1, Kiyoung Lee, Seung-Jo Yang, Ahyoung Choi, Dongmin Kang, Yoo Kyoung Lee, Jang-Cheon Cho.   

Abstract

We report the genome sequence of actinobacterial strain IMCC13023, isolated from arctic fjord seawater. Phylogenetic analysis of 16S rRNA gene showed that the strain is related to "Candidatus Aquiluna rubra." The genome information suggests that strain IMCC13023 is a photoheterotroph carrying actinorhodopsin, with the smallest genome ever reported for a free-living member of the Actinobacteria.

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Year:  2012        PMID： 22689238      PMCID： PMC3434754          DOI： 10.1128/JB.00586-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction.

Authors:  Robert M Morris; Brook L Nunn; Christian Frazar; David R Goodlett; Ying S Ting; Gabrielle Rocap
Journal:  ISME J       Date:  2010-02-18       Impact factor: 10.302

2.  Effects of crude oil on marine microbial communities in short term outdoor microcosms.

Authors:  Seung Won Jung; Joon Sang Park; Oh Youn Kown; Jung-Hoon Kang; Won Joon Shim; Young-Ok Kim
Journal:  J Microbiol       Date:  2010-11-03       Impact factor: 3.422

3.  Microbial diversity in the deep sea and the underexplored "rare biosphere".

Authors:  Mitchell L Sogin; Hilary G Morrison; Julie A Huber; David Mark Welch; Susan M Huse; Phillip R Neal; Jesus M Arrieta; Gerhard J Herndl
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-31       Impact factor: 11.205

4.  Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments.

Authors:  Adrian K Sharma; Olga Zhaxybayeva; R Thane Papke; W Ford Doolittle
Journal:  Environ Microbiol       Date:  2008-01-24       Impact factor: 5.491

5.  Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria.

Authors:  Adrian K Sharma; Katrin Sommerfeld; George S Bullerjahn; Audrey R Matteson; Steven W Wilhelm; Jan Jezbera; Ulrike Brandt; W Ford Doolittle; Martin W Hahn
Journal:  ISME J       Date:  2009-02-26       Impact factor: 10.302

6.  Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC.

Authors:  Rohit Ghai; Katherine D McMahon; Francisco Rodriguez-Valera
Journal:  Environ Microbiol Rep       Date:  2011-08-22       Impact factor: 3.541

7.  An assessment of actinobacterial diversity in the marine environment.

Authors:  Paul R Jensen; Federico M Lauro
Journal:  Antonie Van Leeuwenhoek       Date:  2008-05-24       Impact factor: 2.271

Review 8.  A guide to the natural history of freshwater lake bacteria.

Authors:  Ryan J Newton; Stuart E Jones; Alexander Eiler; Katherine D McMahon; Stefan Bertilsson
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

9.  Environmental genome shotgun sequencing of the Sargasso Sea.

Authors:  J Craig Venter; Karin Remington; John F Heidelberg; Aaron L Halpern; Doug Rusch; Jonathan A Eisen; Dongying Wu; Ian Paulsen; Karen E Nelson; William Nelson; Derrick E Fouts; Samuel Levy; Anthony H Knap; Michael W Lomas; Ken Nealson; Owen White; Jeremy Peterson; Jeff Hoffman; Rachel Parsons; Holly Baden-Tillson; Cynthia Pfannkoch; Yu-Hui Rogers; Hamilton O Smith
Journal:  Science       Date:  2004-03-04       Impact factor: 47.728

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  18 in total

1.  Light Modulates the Physiology of Nonphototrophic Actinobacteria.

Authors:  Julia A Maresca; Jessica L Keffer; Priscilla P Hempel; Shawn W Polson; Olga Shevchenko; Jaysheel Bhavsar; Deborah Powell; Kelsey J Miller; Archana Singh; Martin W Hahn
Journal:  J Bacteriol       Date:  2019-04-24       Impact factor: 3.490

2.  Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85-90 °N.

Authors:  Beatriz Fernández-Gómez; Beatriz Díez; Martin F Polz; José Ignacio Arroyo; Fernando D Alfaro; Germán Marchandon; Cynthia Sanhueza; Laura Farías; Nicole Trefault; Pablo A Marquet; Marco A Molina-Montenegro; Peter Sylvander; Pauline Snoeijs-Leijonmalm
Journal:  ISME J       Date:  2018-09-18       Impact factor: 10.302

3.  Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria.

Authors:  Stefan M Neuenschwander; Rohit Ghai; Jakob Pernthaler; Michaela M Salcher
Journal:  ISME J       Date:  2017-10-13       Impact factor: 10.302

4.  Complete Genome Sequence of Aquiluna sp. Strain KACHI24, Isolated from River Surface Water.

Authors:  Yusuke Ogata; Keiji Watanabe; Shusuke Takemine; Kaoru Kaida; Maki Tanokura; Wataru Suda
Journal:  Microbiol Resour Announc       Date:  2022-09-19

5.  Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake.

Authors:  Sheree Yau; Federico M Lauro; Timothy J Williams; Matthew Z Demaere; Mark V Brown; John Rich; John Ae Gibson; Ricardo Cavicchioli
Journal:  ISME J       Date:  2013-04-25       Impact factor: 10.302

6.  Characterization of an Unconventional Rhodopsin from the Freshwater Actinobacterium Rhodoluna lacicola.

Authors:  J L Keffer; M W Hahn; J A Maresca
Journal:  J Bacteriol       Date:  2015-06-08       Impact factor: 3.490

7.  Dynamics of Heterotrophic Bacterial Assemblages within Synechococcus Cultures.

Authors:  Yu Wang; Rui Xie; Qiang Zheng; Andrew S Lang; Yanting Liu; Jiayao Lu; Xiaodong Zhang; Jun Sun; Curtis A Suttle; Nianzhi Jiao
Journal:  Appl Environ Microbiol       Date:  2018-01-17       Impact factor: 4.792

8.  Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China.

Authors:  Caiyun Yang; Yi Li; Benjamin Zhou; Yanyan Zhou; Wei Zheng; Yun Tian; Joy D Van Nostrand; Liyou Wu; Zhili He; Jizhong Zhou; Tianling Zheng
Journal:  Sci Rep       Date:  2015-02-16       Impact factor: 4.379

9.  Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria.

Authors:  Rohit Ghai; Carolina Megumi Mizuno; Antonio Picazo; Antonio Camacho; Francisco Rodriguez-Valera
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Rhodoluna lacicola gen. nov., sp. nov., a planktonic freshwater bacterium with stream-lined genome.

Authors:  Martin W Hahn; Johanna Schmidt; Sami J Taipale; W Ford Doolittle; Ulrike Koll
Journal:  Int J Syst Evol Microbiol       Date:  2014-07-01       Impact factor: 2.747
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