Literature DB >> 22689236

Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587.

Jackson Antônio Marcondes de Souza1, Eduardo Tieppo, Giovana de Souza Magnani, Lucia Maria Carareto Alves, Rodrigo Luís Cardoso, Leonardo Magalhães Cruz, Lucas Ferrari de Oliveira, Roberto Tadeu Raittz, Emanuel Maltempi de Souza, Fábio de Oliveira Pedrosa, Eliana Gertrudes de Macedo Lemos.   

Abstract

The draft sequence of the genome of Bradyrhizobium elkanii 587 is presented. This was obtained using Illumina Next-Gen DNA sequencing combined with Sanger sequencing. Genes for the pathways involved in biological nitrogen fixation (the nif gene cluster), nod genes including nodABC, and genes for the type III protein secretion system (T3SS) are present.

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Year:  2012        PMID： 22689236      PMCID： PMC3434731          DOI： 10.1128/JB.00563-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

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5.  TtsI regulates symbiotic genes in Rhizobium species NGR234 by binding to tts boxes.

Authors:  Roseli Wassem; Hajime Kobayashi; Kumiko Kambara; Antoine Le Quéré; Graham C Walker; William J Broughton; William J Deakin
Journal:  Mol Microbiol       Date:  2008-03-20       Impact factor: 3.501

6.  Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems.

Authors:  Christel Schmeisser; Heiko Liesegang; Dagmar Krysciak; Nadia Bakkou; Antoine Le Quéré; Antje Wollherr; Isabelle Heinemeyer; Burkhard Morgenstern; Andreas Pommerening-Röser; Margarita Flores; Rafael Palacios; Sydney Brenner; Gerhard Gottschalk; Ruth A Schmitz; William J Broughton; Xavier Perret; Axel W Strittmatter; Wolfgang R Streit
Journal:  Appl Environ Microbiol       Date:  2009-04-17       Impact factor: 4.792

7.  Genetic organization and functional analysis of the type III secretion system of Bradyrhizobium elkanii.

Authors:  Shin Okazaki; Susanne Zehner; Jana Hempel; Kathrin Lang; Michael Göttfert
Journal:  FEMS Microbiol Lett       Date:  2009-06       Impact factor: 2.742

8.  Common soybean inoculant strains in Brazil are members of Bradyrhizobium elkanii.

Authors:  N G Rumjanek; R C Dobert; P van Berkum; E W Triplett
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9.  Bacterial RuBisCO is required for efficient Bradyrhizobium/Aeschynomene symbiosis.

Authors:  Benjamin Gourion; Nathanaël Delmotte; Katia Bonaldi; Nico Nouwen; Julia A Vorholt; Eric Giraud
Journal:  PLoS One       Date:  2011-07-05       Impact factor: 3.240

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  8 in total

Review 1.  Secretion systems and signal exchange between nitrogen-fixing rhizobia and legumes.

Authors:  Matthew S Nelson; Michael J Sadowsky
Journal:  Front Plant Sci       Date:  2015-07-01       Impact factor: 5.753

2.  Isolation of novel Afipia septicemium and identification of previously unknown bacteria Bradyrhizobium sp. OHSU_III from blood of patients with poorly defined illnesses.

Authors:  Shyh-Ching Lo; Guo-Chiuan Hung; Bingjie Li; Haiyan Lei; Tianwei Li; Kenjiro Nagamine; Jing Zhang; Shien Tsai; Richard Bryant
Journal:  PLoS One       Date:  2013-10-14       Impact factor: 3.240

3.  Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1016, a Potential Symbiotic Biofertilizer for Agriculture.

Authors:  Julien Crovadore; Gautier Calmin; Romain Chablais; Bastien Cochard; Torsten Schulz; François Lefort
Journal:  Genome Announc       Date:  2016-10-06

4.  Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1015, a Highly Ammonia-Tolerant Nitrifying Bacterium.

Authors:  Julien Crovadore; Gautier Calmin; Bastien Cochard; Romain Chablais; François Lefort
Journal:  Genome Announc       Date:  2016-03-10

5.  Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates.

Authors:  Erica M Lopes; Luciano T Kishi; Camila C Fernandes; Fernanda Larozza Paganelli; Lucia M C Alves; Eliana G M Lemos; Jackson A Marcondes de Souza
Journal:  Genome Announc       Date:  2017-02-23

6.  High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.

Authors:  Wayne Reeve; Peter van Berkum; Julie Ardley; Rui Tian; Margaret Gollagher; Dora Marinova; Patrick Elia; T B K Reddy; Manoj Pillay; Neha Varghese; Rekha Seshadri; Natalia Ivanova; Tanja Woyke; Mohamed N Baeshen; Nabih A Baeshen; Nikos Kyrpides
Journal:  Stand Genomic Sci       Date:  2017-03-04

7.  Impact of a G2-EPSPS & GAT Dual Transgenic Glyphosate-Resistant Soybean Line on the Soil Microbial Community under Field Conditions Affected by Glyphosate Application.

Authors:  Minkai Yang; Zhongling Wen; Aliya Fazal; Xiaomei Hua; Xinhong Xu; Tongming Yin; Jinliang Qi; Rongwu Yang; Guihua Lu; Zhi Hong; Yonghua Yang
Journal:  Microbes Environ       Date:  2020       Impact factor: 2.912

Review 8.  Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.

Authors:  Anastasia P Tampakaki
Journal:  Front Plant Sci       Date:  2014-03-27       Impact factor: 5.753
  8 in total

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