Literature DB >> 22689233

Draft genome sequence of the nitrophenol-degrading actinomycete Rhodococcus imtechensis RKJ300.

Surendra Vikram1, Shailesh Kumar, Srikrishna Subramanian, Gajendra Pal Singh Raghava.   

Abstract

We report the 8.231-Mb genome sequence of Rhodococcus imtechensis RKJ300, isolated from pesticide-contaminated soil in Punjab, India. The genome sequence of the strain RKJ300 will be helpful in exploring the molecular pathways involved in the degradation of nitrophenols.

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Year:  2012        PMID： 22689233      PMCID： PMC3434742          DOI： 10.1128/JB.00532-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.

Authors:  Ravi K Patel; Mukesh Jain
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

2.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

3.  The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.

Authors:  Michael P McLeod; René L Warren; William W L Hsiao; Naoto Araki; Matthew Myhre; Clinton Fernandes; Daisuke Miyazawa; Wendy Wong; Anita L Lillquist; Dennis Wang; Manisha Dosanjh; Hirofumi Hara; Anca Petrescu; Ryan D Morin; George Yang; Jeff M Stott; Jacqueline E Schein; Heesun Shin; Duane Smailus; Asim S Siddiqui; Marco A Marra; Steven J M Jones; Robert Holt; Fiona S L Brinkman; Keisuke Miyauchi; Masao Fukuda; Julian E Davies; William W Mohn; Lindsay D Eltis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

4.  Rhodococcus imtechensis sp. nov., a nitrophenol-degrading actinomycete.

Authors:  Anuradha Ghosh; Debarati Paul; Dhan Prakash; Shanmugam Mayilraj; Rakesh K Jain
Journal:  Int J Syst Evol Microbiol       Date:  2006-08       Impact factor: 2.747

5.  Degradation of 4-nitrophenol, 2-chloro-4-nitrophenol, and 2,4-dinitrophenol by Rhodococcus imtechensis strain RKJ300.

Authors:  Anuradha Ghosh; Meenu Khurana; Archana Chauhan; Masahiro Takeo; Asit K Chakraborti; Rakesh K Jain
Journal:  Environ Sci Technol       Date:  2010-02-01       Impact factor: 9.028

6.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  7 in total
  5 in total

1.  A Two-Component para-Nitrophenol Monooxygenase Initiates a Novel 2-Chloro-4-Nitrophenol Catabolism Pathway in Rhodococcus imtechensis RKJ300.

Authors:  Jun Min; Jun-Jie Zhang; Ning-Yi Zhou
Journal:  Appl Environ Microbiol       Date:  2015-11-13       Impact factor: 4.792

2.  Bioinformatics analysis of bacterial annexins--putative ancestral relatives of eukaryotic annexins.

Authors:  Praveen Kumar Kodavali; Małgorzata Dudkiewicz; Sławomir Pikuła; Krzysztof Pawłowski
Journal:  PLoS One       Date:  2014-01-16       Impact factor: 3.240

3.  Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation.

Authors:  Ashish Pathak; Ashvini Chauhan; Jochen Blom; Karl J Indest; Carina M Jung; Paul Stothard; Gopal Bera; Stefan J Green; Andrew Ogram
Journal:  PLoS One       Date:  2016-08-17       Impact factor: 3.240

4.  Characterization and genome functional analysis of a novel metamitron-degrading strain Rhodococcus sp. MET via both triazinone and phenyl rings cleavage.

Authors:  Hua Fang; Tianheng Xu; Duantao Cao; Longyin Cheng; Yunlong Yu
Journal:  Sci Rep       Date:  2016-08-31       Impact factor: 4.379

5.  Genome-Based Insights into the Production of Carotenoids by Antarctic Bacteria, Planococcus sp. ANT_H30 and Rhodococcus sp. ANT_H53B.

Authors:  Michal Styczynski; Agata Rogowska; Katarzyna Gieczewska; Maciej Garstka; Anna Szakiel; Lukasz Dziewit
Journal:  Molecules       Date:  2020-09-23       Impact factor: 4.411
  5 in total

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