Literature DB >> 22688645

New marks on the block: Set5 methylates H4 lysines 5, 8 and 12.

Erin M Green1, Ashby J Morrison, Or Gozani.   

Abstract

The methylation of lysine residues in the N-terminal tails of histones is a highly conserved mechanism that regulates critical functions of chromatin, such as the control of gene expression. Using a biochemical approach, we recently identified new methylation marks on the histone H4 tail in budding yeast at lysines 5, 8 and 12, catalyzed by the previously-uncharacterized enzyme Set5. Genetic studies revealed that Set5 functions in cellular processes that also rely on the global chromatin modifying complexes COMPASS and NuA4, which methylate H3 lysine 4 and acetylate H4 lysines 5, 8 and 12, respectively. The identification of new methylation events on the H4 tail raises many intriguing questions regarding their function and their interaction with known histone modifications. Here, we analyze the insights gained about the new enzyme Set5 and the implications for new functionality added to the H4 tail.

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Year:  2012        PMID: 22688645      PMCID: PMC3851190          DOI: 10.4161/nucl.20695

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  47 in total

1.  Genome-wide map of nucleosome acetylation and methylation in yeast.

Authors:  Dmitry K Pokholok; Christopher T Harbison; Stuart Levine; Megan Cole; Nancy M Hannett; Tong Ihn Lee; George W Bell; Kimberly Walker; P Alex Rolfe; Elizabeth Herbolsheimer; Julia Zeitlinger; Fran Lewitter; David K Gifford; Richard A Young
Journal:  Cell       Date:  2005-08-26       Impact factor: 41.582

Review 2.  Acetylation of yeast histone H4 lysine 16: a switch for protein interactions in heterochromatin and euchromatin.

Authors:  C B Millar; S K Kurdistani; M Grunstein
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2004

Review 3.  Functions of site-specific histone acetylation and deacetylation.

Authors:  Mona D Shahbazian; Michael Grunstein
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

4.  Combinatorial patterns of histone acetylations and methylations in the human genome.

Authors:  Zhibin Wang; Chongzhi Zang; Jeffrey A Rosenfeld; Dustin E Schones; Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Weiqun Peng; Michael Q Zhang; Keji Zhao
Journal:  Nat Genet       Date:  2008-06-15       Impact factor: 38.330

Review 5.  Genome-wide patterns of histone modifications in yeast.

Authors:  Catherine B Millar; Michael Grunstein
Journal:  Nat Rev Mol Cell Biol       Date:  2006-08-16       Impact factor: 94.444

6.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

Review 7.  Histone modifications in cancer biology and prognosis.

Authors:  Siavash K Kurdistani
Journal:  Prog Drug Res       Date:  2011

8.  Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast.

Authors:  Catherine B Millar; Feng Xu; Kangling Zhang; Michael Grunstein
Journal:  Genes Dev       Date:  2006-03-15       Impact factor: 11.361

9.  Everybody's welcome: The big tent approach to epigenetic drug discovery.

Authors:  Erin M Green; Or Gozani
Journal:  Drug Discov Today Ther Strateg       Date:  2011-09-20

10.  Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast.

Authors:  A Hecht; T Laroche; S Strahl-Bolsinger; S M Gasser; M Grunstein
Journal:  Cell       Date:  1995-02-24       Impact factor: 41.582

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  9 in total

1.  Set5 and Set1 cooperate to repress gene expression at telomeres and retrotransposons.

Authors:  Glòria Mas Martín; Devin A King; Erin M Green; Pablo E Garcia-Nieto; Richard Alexander; Sean R Collins; Nevan J Krogan; Or P Gozani; Ashby J Morrison
Journal:  Epigenetics       Date:  2014-01-17       Impact factor: 4.528

2.  Using Yeast to Define the Regulatory Role of Protein Lysine Methylation.

Authors:  Yogita Jethmalani; Erin M Green
Journal:  Curr Protein Pept Sci       Date:  2020       Impact factor: 3.272

3.  Function of the MYND Domain and C-Terminal Region in Regulating the Subcellular Localization and Catalytic Activity of the SMYD Family Lysine Methyltransferase Set5.

Authors:  Deepika Jaiswal; Rashi Turniansky; James J Moresco; Sabeen Ikram; Ganesh Ramaprasad; Assefa Akinwole; Julie Wolf; John R Yates; Erin M Green
Journal:  Mol Cell Biol       Date:  2020-01-03       Impact factor: 4.272

4.  Histone Deacetylase HDA-2 Regulates Trichoderma atroviride Growth, Conidiation, Blue Light Perception, and Oxidative Stress Responses.

Authors:  Macario Osorio-Concepción; Gema Rosa Cristóbal-Mondragón; Braulio Gutiérrez-Medina; Sergio Casas-Flores
Journal:  Appl Environ Microbiol       Date:  2017-01-17       Impact factor: 4.792

5.  The histone methyltransferases Set5 and Set1 have overlapping functions in gene silencing and telomere maintenance.

Authors:  Meagan Jezek; Alison Gast; Grace Choi; Rushmie Kulkarni; Jeremiah Quijote; Andrew Graham-Yooll; DoHwan Park; Erin M Green
Journal:  Epigenetics       Date:  2016-12-02       Impact factor: 4.528

Review 6.  Histone Modifications and the Maintenance of Telomere Integrity.

Authors:  Meagan Jezek; Erin M Green
Journal:  Cells       Date:  2019-02-25       Impact factor: 6.600

7.  Deacetylation of H4 lysine16 affects acetylation of lysine residues in histone H3 and H4 and promotes transcription of constitutive genes.

Authors:  Anagh Ray; Preeti Khan; Ronita Nag Chaudhuri
Journal:  Epigenetics       Date:  2020-08-23       Impact factor: 4.528

8.  Evolutionary History of the Smyd Gene Family in Metazoans: A Framework to Identify the Orthologs of Human Smyd Genes in Drosophila and Other Animal Species.

Authors:  Eduardo Calpena; Francesc Palau; Carmen Espinós; Máximo Ibo Galindo
Journal:  PLoS One       Date:  2015-07-31       Impact factor: 3.240

9.  The histone code of Toxoplasma gondii comprises conserved and unique posttranslational modifications.

Authors:  Sheila C Nardelli; Fa-Yun Che; Natalie C Silmon de Monerri; Hui Xiao; Edward Nieves; Carlos Madrid-Aliste; Sergio O Angel; William J Sullivan; Ruth H Angeletti; Kami Kim; Louis M Weiss
Journal:  mBio       Date:  2013-12-10       Impact factor: 7.867

  9 in total

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