Literature DB >> 22686107

Disentangling dynamic changes of multiple cellular components during the yeast cell cycle by in vivo multivariate Raman imaging.

Chuan-Keng Huang1, Masahiro Ando, Hiro-o Hamaguchi, Shinsuke Shigeto.   

Abstract

Cellular processes are intrinsically complex and dynamic, in which a myriad of cellular components including nucleic acids, proteins, membranes, and organelles are involved and undergo spatiotemporal changes. Label-free Raman imaging has proven powerful for studying such dynamic behaviors in vivo and at the molecular level. To construct Raman images, univariate data analysis has been commonly employed, but it cannot be free from uncertainties due to severely overlapped spectral information. Here, we demonstrate multivariate curve resolution analysis for time-lapse Raman imaging of a single dividing yeast cell. A four-dimensional (spectral variable, spatial positions in the two-dimensional image plane, and time sequence) Raman data "hypercube" is unfolded to a two-way array and then analyzed globally using multivariate curve resolution. The multivariate Raman imaging thus accomplished successfully disentangles dynamic changes of both concentrations and distributions of major cellular components (lipids, proteins, and polysaccharides) during the cell cycle of the yeast cell. The results show a drastic decrease in the amount of lipids by ~50% after cell division and uncover a protein-associated component that has not been detected with previous univariate approaches.

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Year:  2012        PMID: 22686107     DOI: 10.1021/ac300834f

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  14 in total

1.  Raman spectral dynamics of single cells in the early stages of growth factor stimulation.

Authors:  Sota Takanezawa; Shin-ichi Morita; Yukihiro Ozaki; Yasushi Sako
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

2.  Spatiotemporal Analysis of Cytokinetic Events in Fission Yeast.

Authors:  Bin Wei; Brian S Hercyk; Julius Habiyaremye; Maitreyi Das
Journal:  J Vis Exp       Date:  2017-02-20       Impact factor: 1.355

3.  A Single-Organelle Optical Omics Platform for Cell Science and Biomarker Discovery.

Authors:  Artem Pliss; Andrey N Kuzmin; Adrian Lita; Rahul Kumar; Orieta Celiku; G Ekin Atilla-Gokcumen; Omer Gokcumen; Dhyan Chandra; Mioara Larion; Paras N Prasad
Journal:  Anal Chem       Date:  2021-05-28       Impact factor: 8.008

4.  Label-free Chemical Imaging of Fungal Spore Walls by Raman Microscopy and Multivariate Curve Resolution Analysis.

Authors:  Hemanth Noothalapati; Takahiro Sasaki; Tomohiro Kaino; Makoto Kawamukai; Masahiro Ando; Hiro-O Hamaguchi; Tatsuyuki Yamamoto
Journal:  Sci Rep       Date:  2016-06-09       Impact factor: 4.379

5.  Hyperspectral image analysis for CARS, SRS, and Raman data.

Authors:  Francesco Masia; Arnica Karuna; Paola Borri; Wolfgang Langbein
Journal:  J Raman Spectrosc       Date:  2015-06-14       Impact factor: 3.133

6.  Hyperspectral volumetric coherent anti-Stokes Raman scattering microscopy: quantitative volume determination and NaCl as non-resonant standard.

Authors:  Arnica Karuna; Francesco Masia; Paola Borri; Wolfgang Langbein
Journal:  J Raman Spectrosc       Date:  2016-02-10       Impact factor: 3.133

7.  When cells divide: Label-free multimodal spectral imaging for exploratory molecular investigation of living cells during cytokinesis.

Authors:  Jen-Fang Hsu; Pei-Ying Hsieh; Hsin-Yun Hsu; Shinsuke Shigeto
Journal:  Sci Rep       Date:  2015-12-03       Impact factor: 4.379

8.  Raman spectroscopic imaging of the whole Ciona intestinalis embryo during development.

Authors:  Mitsuru J Nakamura; Kohji Hotta; Kotaro Oka
Journal:  PLoS One       Date:  2013-08-20       Impact factor: 3.240

9.  Quantitative chemical imaging and unsupervised analysis using hyperspectral coherent anti-Stokes Raman scattering microscopy.

Authors:  Francesco Masia; Adam Glen; Phil Stephens; Paola Borri; Wolfgang Langbein
Journal:  Anal Chem       Date:  2013-11-06       Impact factor: 6.986

10.  In situ detection of antibiotic amphotericin B produced in Streptomyces nodosus using Raman microspectroscopy.

Authors:  Rimi Miyaoka; Masahito Hosokawa; Masahiro Ando; Tetsushi Mori; Hiro-O Hamaguchi; Haruko Takeyama
Journal:  Mar Drugs       Date:  2014-05-13       Impact factor: 5.118

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