Literature DB >> 22684960

Field information management systems for DNA barcoding.

John Deck1, Joyce Gross, Steven Stones-Havas, Neil Davies, Rebecca Shapley, Christopher Meyer.   

Abstract

Information capture pertaining to the "what?", "where?", and "when?" of biodiversity data is critical to maintain data integrity, interoperability, and utility. Moreover, DNA barcoding and other biodiversity studies must adhere to agreed upon data standards in order to effectively contextualize the biota encountered. A field information management system (FIMS) is presented that locks down metadata associated with collecting events, specimens, and tissues. Emphasis is placed on ease of use and flexibility of operation. Standardized templates for data entry are validated through a flexible, project-oriented validation process that assures adherence to data standards and thus data quality. Furthermore, we provide export functionality to existing cloud-based solutions, including Google Fusion Tables and Flickr to allow sharing of these data elements across research collaboration teams and other potential data harvesters via API services.

Entities:  

Mesh:

Year:  2012        PMID: 22684960     DOI: 10.1007/978-1-61779-591-6_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.

Authors:  John Deck; Michelle R Gaither; Rodney Ewing; Christopher E Bird; Neil Davies; Christopher Meyer; Cynthia Riginos; Robert J Toonen; Eric D Crandall
Journal:  PLoS Biol       Date:  2017-08-03       Impact factor: 8.029

2.  cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies.

Authors:  John H Chase; Evan Bolyen; Jai Ram Rideout; J Gregory Caporaso
Journal:  mSystems       Date:  2015-12-22       Impact factor: 6.496

3.  Categorization of species as native or nonnative using DNA sequence signatures without a complete reference library.

Authors:  Jeremy C Andersen; Peter Oboyski; Neil Davies; Sylvain Charlat; Curtis Ewing; Christopher Meyer; Henrik Krehenwinkel; Jun Ying Lim; Suzuki Noriyuki; Thibault Ramage; Rosemary G Gillespie; George K Roderick
Journal:  Ecol Appl       Date:  2019-06-12       Impact factor: 4.657

  3 in total

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