| Literature DB >> 22681639 |
Shunsuke Sato1, Takuya Genda, Katsuharu Hirano, Hironori Tsuzura, Yutaka Narita, Yoshio Kanemitsu, Tetsu Kikuchi, Katsuyori Iijima, Ryo Wada, Takafumi Ichida.
Abstract
BACKGROUND: Elevated serum alpha-fetoprotein (AFP) is not only a diagnostic marker for hepatocellular carcinoma (HCC), but is also a risk factor for HCC in chronic hepatitis C patients who do not have HCC. AIM: The aim was to analyse the hepatic gene expression signature in chronic hepatitis C patients with elevated AFP, who were at high risk for HCC.Entities:
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Year: 2012 PMID: 22681639 PMCID: PMC3466415 DOI: 10.1111/j.1478-3231.2012.02827.x
Source DB: PubMed Journal: Liver Int ISSN: 1478-3223 Impact factor: 5.828
Baseline characteristics of patients enrolled in the microarray analysis
| Variables | All patients | Patients with normal AFP (<10 ng/mL) | Patients with elevated AFP (≥10 ng/mL) | |
|---|---|---|---|---|
| Number | ||||
| Age (years) | 59.5 (32–78) | 57.0 (32–78) | 65.0 (44–78) | 0.142 |
| Gender (male/female) | 28/20 | 21/12 | 7/8 | 0.349 |
| Body mass index (kg/cm2) | 22.7 (17.5–30.4) | 22.8 (18.6–30.4) | 22.5 (17.5–29.0) | 0.755 |
| ALT (IU/L) | 61.5 (10–290) | 39.0 (10–270) | 162.0 (54–290) | <0.001 |
| γGTP (IU/L) | 38.5 (9–540) | 28.0 (9–119) | 16 (28–540) | <0.001 |
| Platelet count (104/μL) | 18.8 (5.2–35.4) | 20.5 (8.3–35.4) | 14.8 (5.2–22.4) | <0.001 |
| AFP (ng/μL) | 5.0 (2–120) | 4.0 (2–9) | 19.0 (10–120) | <0.001 |
| Staging (F0-F2/F3-F4) | 41/7 | 33/0 | 8/7 | <0.001 |
| Grading (A0-A1/A2-A3) | 12/26 | 10/23 | 2/13 | 0.292 |
ALT, alanine aminotransferase; AFP, alpha-fetoprotein; γGTP, γ-glutamyl transpeptidase.
Data are expressed as median (range).
The P value was determined using the Mann–Whitney U-test, the Chi-square test, and Fisher's exact probability test.
Fig. 1Analysis of gene expression data. (A) Principal component analysis for the 627 differentially expressed genes between the patients with normal alpha-fetoprotein (AFP) (N = 33, blue dots) and elevated AFP (N = 15, red dots). (B) Hierarchical clustering for the 627 differentially expressed genes between the patients with normal AFP (N = 33, blue squares) and elevated AFP (N = 15, red squares). Red and blue cells indicate the ratio of each expression level above and below the median respectively.
Differentially expressed genes in patients with elevated alpha-fetoprotein by fold change ranking (Top20)
| Symbol | Title | Up or down | Fold change | |
|---|---|---|---|---|
| AKR1B10 | Aldo-keto reductase family 1, member B10 | Up | 9.19E-07 | 26.2 |
| KRT23 | Keratin 23 | Up | 4.17E-07 | 22.6 |
| GPC3 | Glypican 3 | Up | 3.54E-09 | 12.3 |
| FAM3B | Family with sequence similarity 3, member B | Up | 1.67E-06 | 10.5 |
| HKDC1 | Hexokinase domain containing 1 | Up | 3.89E-07 | 8.8 |
| EpCAM | Epithelial cell adhesion molecule (TACSTD1) | Up | 3.07E-06 | 7.6 |
| DHRS2 | Dehydrogenase/reductase (SDR family) member 2 | Down | 2.39E-04 | 7.0 |
| OSTbeta | Organic solute transporter beta | Up | 3.14E-06 | 7.0 |
| NRXN3 | Neurexin 3 | Up | 1.40E-04 | 6.7 |
| CHI3L1 | Chitinase 3-like 1 | Up | 2.92E-06 | 6.5 |
| TMEM125 | Transmembrane protein 125 | Up | 9.21E-06 | 6.3 |
| KCNN2 | Potassium intermediate/small conductance calcium-activated channel, subfamily N | Down | 5.68E-04 | 6.2 |
| PDZK1IP1 | PDZK1 interacting protein 1 | Up | 1.39E-05 | 6.1 |
| RAB25 | RAB25, member RAS oncogene family | Up | 1.73E-05 | 6.0 |
| DIO3OS | Deiodinase, iodothyronine, type 3 opposite strand | Down | 1.87E-06 | 5.6 |
| LYPD1 | LY6/PLAUR domain containing 1 | Up | 3.97E-05 | 5.5 |
| STMN2 | Stathmin-like 2 | Up | 5.53E-04 | 5.1 |
| LOXL4 | Lysyl oxidase-like 4 | Up | 3.91E-06 | 5.1 |
| KLHL29 | Kelch-like protein 29 | Up | 3.68E-08 | 5.0 |
| TMC4 | Transmembrane channel-like 4 | Up | 3.64E-06 | 5.0 |
Fig. 2Quantitative real-time RT-PCR analysis. (A) Comparison of AKR1B10 mRNA expression between the patients with normal alpha-fetoprotein (AFP) and the patients with elevated AFP (Mann–Whitney U-test, P < 0.001). (B) Regression of AKR1B10 mRNA and serum AFP (N = 48, R2 = 0.326, P < 0.001).
Fig. 3AKR1B10 immnohistochemical analysis. (A) Representative immunohistochemical staining of normal control liver tissue. Bile duct epithelium served as the positive control. (B) Representative immunohistochemical staining of liver tissue with chronic hepatitis C (magnification × 100). (C) Quantification of AKR1B10 immunoreactivity (Mann–Whitney U-test). (D) Regression of AKR1B10 immunoreactivity and serum alpha-fetoprotein in patients with chronic hepatitis C (N = 48, R2 = 0.613, P < 0.001).
Baseline characteristics of patients enrolled in the matched case-control study
| Variables | HCC cases ( | Control cases ( | |
|---|---|---|---|
| Gender (male/female) | 14/6 | 28/12 | Matched |
| Age (years) | 65 (44–79) | 66 (44–80) | Matched |
| Staging (F1/F2/F3/F4) | 3/2/11/4 | 6/4/22/8 | Matched |
| Body mass index (kg/m2) | 23.0 (17.5–31.3) | 23.1 (17.3–28.6) | 0.878 |
| ALT (IU/L) | 97 (32–489) | 53 (17–699) | 0.017 |
| γGTP (IU/L) | 79 (24–161) | 45 (13–375) | 0.063 |
| Platelet count (×104/μL) | 9.9 (5.1–17.3) | 15.4 (9.1–24.4) | <0.001 |
| AFP (ng/mL) | 20 (3–142) | 6 (1–576) | 0.007 |
| Interferon therapy (Yes/No) | 16/4 | 37/3 | 0.208 |
| Viral clearance (Yes/No) | 6/14 | 21/19 | 0.099 |
| AKR1B10 expression (%) | 17.7 (0–66.6) | 1.2 (0–41.0) | 0.001 |
| Follow-up duration (days) | 920 (164–2079) | 1534 (406–2118) | 0.004 |
ALT, alanine aminotransferase; AFP, alpha-fetoprotein; γGTP, γ-glutamyl transpeptidase; HCC, hepatocellular carcinoma.
Data are shown as median (range).
The P value was determined using the Mann–Whitney U-test, the chi-square test and Fisher's exact probability test.
Univariate and multivariate analysis for predictors of hepatocellular carcinoma development
| Univariate analysis | Multivariate analysis | ||||
|---|---|---|---|---|---|
| Variable | Category | Hazard ratio (95% CI) | Hazard ratio (95% CI) | ||
| Body mass index (kg/m2) | 0: <25.2 | 1 | 0.332 | ||
| 1: ≥25.2 | 1.75 (0.57–5.42) | ||||
| ALT (IU/L) | 0: <90 | 1 | 0.037 | ||
| 1: ≥90 | 3.53 (1.08–11.56) | ||||
| γGTP (IU/L) | 0: <65 | 1 | 0.061 | ||
| 1: ≥65 | 3.20 (0.95–10.81) | ||||
| Platelet count (×104/μL) | 0: ≥10.0 | 1 | 0.005 | 1 | 0.029 |
| 1: <10.0 | 19.08 (2.44–149.10) | 17.46 (1.34–226.81) | |||
| AFP (ng/mL) | 0: <13 | 1 | 0.012 | ||
| 1: ≥13 | 5.26 (1.43–19.31) | ||||
| AKR1B10 expression (%) | 0: <6 | 1 | 0.006 | 1 | 0.023 |
| 1: ≥6 | 17.79 (2.29–138.33) | 21.45 (1.54–310.86) | |||
| Interferon therapy | 0: Yes | 1 | 0.149 | ||
| 1: No | 5.26 (0.55–50.02) | ||||
| Viral clearance | 0: Yes | 1 | 0.120 | 1 | 0.057 |
| 1: No | 2.41 (0.80–7.32) | 10.34 (0.93–114.40) | |||
ALT, alanine aminotransferase; AFP, alpha-fetoprotein; γGTP, γ-glutamyl transpeptidase.
The P value was determined using the Cox proportional hazard model.
Fig. 4Cumulative incidence of hepatocellular carcinoma development according to AKR1B10 expression (log-rank test, P = 0.001).