Literature DB >> 22676891

Synthetic biology with RNA: progress report.

Yaakov Benenson1.   

Abstract

One of the long-term goals in synthetic biology is the construction of large-scale gene networks to control and manipulate cells. Such networks often tweak natural regulatory mechanisms, or 'switches', in order to achieve the desired function. Regulatory mechanisms that involve RNA building blocks such as messenger RNA, microRNA and riboswitches have become increasingly prominent in this regard. Recent achievements include prototype mRNA sensors, logic circuits that respond to small molecule cues to affect cell fate, and cell-state classifier networks that identify physiological states using multiple microRNA inputs. This Review describes these and other results in RNA-based synthetic biology.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22676891     DOI: 10.1016/j.cbpa.2012.05.192

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  11 in total

1.  Mapping the operational landscape of microRNAs in synthetic gene circuits.

Authors:  Tyler Quarton; Kristina Ehrhardt; James Lee; Srijaa Kannan; Yi Li; Lan Ma; Leonidas Bleris
Journal:  NPJ Syst Biol Appl       Date:  2018-01-11

2.  miRNA-Mediated Regulation of Synthetic Gene Circuits in the Green Alga Chlamydomonas reinhardtii.

Authors:  Francisco J Navarro; David C Baulcombe
Journal:  ACS Synth Biol       Date:  2019-01-24       Impact factor: 5.110

3.  antaRNA: ant colony-based RNA sequence design.

Authors:  Robert Kleinkauf; Martin Mann; Rolf Backofen
Journal:  Bioinformatics       Date:  2015-05-27       Impact factor: 6.937

4.  Engineering modular 'ON' RNA switches using biological components.

Authors:  Pablo Ceres; Jeremiah J Trausch; Robert T Batey
Journal:  Nucleic Acids Res       Date:  2013-09-02       Impact factor: 16.971

5.  Engineering an inducible gene expression system for Bacillus subtilis from a strong constitutive promoter and a theophylline-activated synthetic riboswitch.

Authors:  Wenjing Cui; Laichuang Han; Jintao Cheng; Zhongmei Liu; Li Zhou; Junling Guo; Zhemin Zhou
Journal:  Microb Cell Fact       Date:  2016-11-22       Impact factor: 5.328

Review 6.  The purine riboswitch as a model system for exploring RNA biology and chemistry.

Authors:  Ely B Porter; Joan G Marcano-Velázquez; Robert T Batey
Journal:  Biochim Biophys Acta       Date:  2014-02-28

7.  Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria.

Authors:  Daniel Dar; Maya Shamir; J R Mellin; Mikael Koutero; Noam Stern-Ginossar; Pascale Cossart; Rotem Sorek
Journal:  Science       Date:  2016-04-08       Impact factor: 47.728

8.  Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits.

Authors:  Mario Andrea Marchisio; Moreno Colaiacovo; Ellis Whitehead; Jörg Stelling
Journal:  BMC Syst Biol       Date:  2013-05-27

Review 9.  RNA modularity for synthetic biology.

Authors:  Wade Grabow; Luc Jaeger
Journal:  F1000Prime Rep       Date:  2013-11-01

10.  Exquisite sequence selectivity with small conditional RNAs.

Authors:  Jonathan B Sternberg; Niles A Pierce
Journal:  Nano Lett       Date:  2014-06-30       Impact factor: 11.189

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