Literature DB >> 22675120

Water at hydrophobic interfaces delays proton surface-to-bulk transfer and provides a pathway for lateral proton diffusion.

Chao Zhang1, Denis G Knyazev, Yana A Vereshaga, Emiliano Ippoliti, Trung Hai Nguyen, Paolo Carloni, Peter Pohl.   

Abstract

Fast lateral proton migration along membranes is of vital importance for cellular energy homeostasis and various proton-coupled transport processes. It can only occur if attractive forces keep the proton at the interface. How to reconcile this high affinity to the membrane surface with high proton mobility is unclear. Here, we tested whether a minimalistic model interface between an apolar hydrophobic phase (n-decane) and an aqueous phase mimics the biological pathway for lateral proton migration. The observed diffusion span, on the order of tens of micrometers, and the high proton mobility were both similar to the values previously reported for lipid bilayers. Extensive ab initio simulations on the same water/n-decane interface reproduced the experimentally derived free energy barrier for the excess proton. The free energy profile G(H(+)) adopts the shape of a well at the interface, having a width of two water molecules and a depth of 6 ± 2RT. The hydroniums in direct contact with n-decane have a reduced mobility. However, the hydroniums in the second layer of water molecules are mobile. Their in silico diffusion coefficient matches that derived from our in vitro experiments, (5.7 ± 0.7) 10(-5) cm(2) s(-1). Conceivably, these are the protons that allow for fast diffusion along biological membranes.

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Year:  2012        PMID: 22675120      PMCID: PMC3382531          DOI: 10.1073/pnas.1121227109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Molecular dynamics simulation of proton transport near the surface of a phospholipid membrane.

Authors:  Alexander M Smondyrev; Gregory A Voth
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

2.  Escaping free-energy minima.

Authors:  Alessandro Laio; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

3.  Metadynamics as a tool for exploring free energy landscapes of chemical reactions.

Authors:  Bernd Ensing; Marco De Vivo; Zhiwei Liu; Preston Moore; Michael L Klein
Journal:  Acc Chem Res       Date:  2006-02       Impact factor: 22.384

4.  Kinetics and mechanism of proton transport across membrane nanopores.

Authors:  Christoph Dellago; Gerhard Hummer
Journal:  Phys Rev Lett       Date:  2006-12-11       Impact factor: 9.161

5.  Hydrated excess proton at water-hydrophobic interfaces.

Authors:  Satoru Iuchi; Hanning Chen; Francesco Paesani; Gregory A Voth
Journal:  J Phys Chem B       Date:  2009-04-02       Impact factor: 2.991

6.  Proton transfer via a transient linear water-molecule chain in a membrane protein.

Authors:  Erik Freier; Steffen Wolf; Klaus Gerwert
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-27       Impact factor: 11.205

7.  Rapid long-range proton diffusion along the surface of the purple membrane and delayed proton transfer into the bulk.

Authors:  U Alexiev; R Mollaaghababa; P Scherrer; H G Khorana; M P Heyn
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-17       Impact factor: 11.205

8.  Proton migration along the membrane surface and retarded surface to bulk transfer.

Authors:  J Heberle; J Riesle; G Thiedemann; D Oesterhelt; N A Dencher
Journal:  Nature       Date:  1994-08-04       Impact factor: 49.962

9.  Properties of hydrated excess protons near phospholipid bilayers.

Authors:  Takefumi Yamashita; Gregory A Voth
Journal:  J Phys Chem B       Date:  2010-01-14       Impact factor: 2.991

10.  Ab initio molecular dynamics simulation of the structure and proton transport dynamics of methanol-water solutions.

Authors:  Joseph A Morrone; Kiryn E Haslinger; Mark E Tuckerman
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

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  21 in total

Review 1.  The effect of H3O+ on the membrane morphology and hydrogen bonding of a phospholipid bilayer.

Authors:  Evelyne Deplazes; David Poger; Bruce Cornell; Charles G Cranfield
Journal:  Biophys Rev       Date:  2018-09-15

2.  Exploring fast proton transfer events associated with lateral proton diffusion on the surface of membranes.

Authors:  Nadav Amdursky; Yiyang Lin; Noora Aho; Gerrit Groenhof
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-24       Impact factor: 11.205

Review 3.  Competing for the same space: protons and alkali ions at the interface of phospholipid bilayers.

Authors:  Evelyne Deplazes; Jacqueline White; Christopher Murphy; Charles G Cranfield; Alvaro Garcia
Journal:  Biophys Rev       Date:  2019-05-21

4.  Kinetic coupling of the respiratory chain with ATP synthase, but not proton gradients, drives ATP production in cristae membranes.

Authors:  Alexandra Toth; Axel Meyrat; Stefan Stoldt; Ricardo Santiago; Dirk Wenzel; Stefan Jakobs; Christoph von Ballmoos; Martin Ott
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-21       Impact factor: 11.205

Review 5.  A critique of the capacitor-based "Transmembrane Electrostatically Localized Proton" hypothesis.

Authors:  Todd P Silverstein
Journal:  J Bioenerg Biomembr       Date:  2022-02-21       Impact factor: 3.853

6.  Mechanism of long-range proton translocation along biological membranes.

Authors:  Emile S Medvedev; Alexei A Stuchebrukhov
Journal:  FEBS Lett       Date:  2012-12-22       Impact factor: 4.124

Review 7.  Protons and Hydroxide Ions in Aqueous Systems.

Authors:  Noam Agmon; Huib J Bakker; R Kramer Campen; Richard H Henchman; Peter Pohl; Sylvie Roke; Martin Thämer; Ali Hassanali
Journal:  Chem Rev       Date:  2016-06-17       Impact factor: 60.622

8.  Mechanism of Long-Chain Free Fatty Acid Protonation at the Membrane-Water Interface.

Authors:  Alina A Pashkovskaya; Mario Vazdar; Lars Zimmermann; Olga Jovanovic; Peter Pohl; Elena E Pohl
Journal:  Biophys J       Date:  2018-05-08       Impact factor: 4.033

9.  Superresolution microscopy reveals spatial separation of UCP4 and F0F1-ATP synthase in neuronal mitochondria.

Authors:  Enrico Klotzsch; Alina Smorodchenko; Lukas Löfler; Rudolf Moldzio; Elena Parkinson; Gerhard J Schütz; Elena E Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-22       Impact factor: 11.205

10.  Water dynamics: relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity.

Authors:  John Tatini Titantah; Mikko Karttunen
Journal:  Sci Rep       Date:  2013-10-21       Impact factor: 4.379

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