Literature DB >> 22671132

Toward a small molecule, biomimetic carbonic anhydrase model: theoretical and experimental investigations of a panel of zinc(II) aza-macrocyclic catalysts.

Lucas Koziol1, Carlos A Valdez, Sarah E Baker, Edmond Y Lau, William C Floyd, Sergio E Wong, Joe H Satcher, Felice C Lightstone, Roger D Aines.   

Abstract

A panel of five zinc-chelated aza-macrocycle ligands and their ability to catalyze the hydration of carbon dioxide to bicarbonate, H(2)O + CO(2) → H(+) + HCO(3)(–), was investigated using quantum-mechanical methods and stopped-flow experiments. The key intermediates in the reaction coordinate were optimized using the M06-2X density functional with aug-cc-pVTZ basis set. Activation energies for the first step in the catalytic cycle, nucleophilic CO(2) addition, were calculated from gas-phase optimized transition-state geometries. The computationally derived trend in activation energies was found to not correspond with the experimentally observed rates. However, activation energies for the second, bicarbonate release step, which were estimated using calculated bond dissociation energies, provided good agreement with the observed trend in rate constants. Thus, the joint theoretical and experimental results provide evidence that bicarbonate release, not CO(2) addition, may be the rate-limiting step in CO(2) hydration by zinc complexes of aza-macrocyclic ligands. pH-independent rate constants were found to increase with decreasing Lewis acidity of the ligand-Zn complex, and the trend in rate constants was correlated with molecular properties of the ligands. It is suggested that tuning catalytic efficiency through the first coordination shell of Zn(2+) ligands is predominantly a balance between increasing charge-donating character of the ligand and maintaining the catalytically relevant pK(a) below the operating pH.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22671132     DOI: 10.1021/ic300526b

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  11 in total

1.  Methanethiol Binding Strengths and Deprotonation Energies in Zn(II)-Imidazole Complexes from M05-2X and MP2 Theories: Coordination Number and Geometry Influences Relevant to Zinc Enzymes.

Authors:  Douglas P Linder; Kenton R Rodgers
Journal:  J Phys Chem B       Date:  2015-09-04       Impact factor: 2.991

Review 2.  Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.

Authors:  Tyler B J Pinter; Karl J Koebke; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-02       Impact factor: 15.336

3.  Design of Heteronuclear Metalloenzymes.

Authors:  A Bhagi-Damodaran; P Hosseinzadeh; E Mirts; J Reed; I D Petrik; Y Lu
Journal:  Methods Enzymol       Date:  2016-07-26       Impact factor: 1.600

4.  A de novo designed metalloenzyme for the hydration of CO2.

Authors:  Virginia M Cangelosi; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-18       Impact factor: 15.336

5.  Synthesis of 12-Membered Tetra-aza Macrocyclic Pyridinophanes Bearing Electron-Withdrawing Groups.

Authors:  Akop Yepremyan; Magy A Mekhail; Brian P Niebuhr; Kristof Pota; Nishanth Sadagopan; Timothy M Schwartz; Kayla N Green
Journal:  J Org Chem       Date:  2020-03-25       Impact factor: 4.354

6.  Aminoalcohol-Induced Activation of Organophosphorus Hydrolase (OPH) towards Diisopropylfluorophosphate (DFP).

Authors:  Dandan Li; Yunze Zhang; Haitao Song; Liangqiu Lu; Deli Liu; Yongze Yuan
Journal:  PLoS One       Date:  2017-01-13       Impact factor: 3.240

7.  Electrochemical [11C]CO2 to [11C]CO conversion for PET imaging.

Authors:  David A Anders; Salvatore Bongarzone; Robin Fortt; Antony D Gee; Nicholas J Long
Journal:  Chem Commun (Camb)       Date:  2017-03-07       Impact factor: 6.222

8.  A direct method for the N-tetraalkylation of azamacrocycles.

Authors:  Andrew J Counsell; Angus T Jones; Matthew H Todd; Peter J Rutledge
Journal:  Beilstein J Org Chem       Date:  2016-11-18       Impact factor: 2.883

9.  Kinetic study of catalytic CO2 hydration by metal-substituted biomimetic carbonic anhydrase model complexes.

Authors:  DongKook Park; Man Sig Lee
Journal:  R Soc Open Sci       Date:  2019-08-07       Impact factor: 2.963

10.  Comparison and analysis of zinc and cobalt-based systems as catalytic entities for the hydration of carbon dioxide.

Authors:  Edmond Y Lau; Sergio E Wong; Sarah E Baker; Jane P Bearinger; Lucas Koziol; Carlos A Valdez; Joseph H Satcher; Roger D Aines; Felice C Lightstone
Journal:  PLoS One       Date:  2013-06-20       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.