Literature DB >> 22669678

DNA methylation screening and analysis.

Karilyn E Sant1, Muna S Nahar, Dana C Dolinoy.   

Abstract

DNA methylation is an epigenetic form of gene regulation that is universally important throughout the life course, especially during in utero and postnatal development. DNA methylation aids in cell cycle regulation and cellular differentiation processes. Previous studies have demonstrated that DNA methylation profiles may be altered by diet and the environment, and that these profiles are especially vulnerable during development. Thus, it is important to understand the role of DNA methylation in developmental governance and subsequent disease progression. A variety of molecular methods exist to assay for global, gene-specific, and epigenome-wide methylation. Here we describe these methods and discuss their relative strengths and limitations.

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Year:  2012        PMID: 22669678      PMCID: PMC3592359          DOI: 10.1007/978-1-61779-867-2_24

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  71 in total

Review 1.  The placenta: transcriptional, epigenetic, and physiological integration during development.

Authors:  Emin Maltepe; Anna I Bakardjiev; Susan J Fisher
Journal:  J Clin Invest       Date:  2010-04-01       Impact factor: 14.808

Review 2.  Epigenetic reprogramming in mammals.

Authors:  Hugh D Morgan; Fátima Santos; Kelly Green; Wendy Dean; Wolf Reik
Journal:  Hum Mol Genet       Date:  2005-04-15       Impact factor: 6.150

Review 3.  Illumina universal bead arrays.

Authors:  Jian-Bing Fan; Kevin L Gunderson; Marina Bibikova; Joanne M Yeakley; Jing Chen; Eliza Wickham Garcia; Lori L Lebruska; Marc Laurent; Richard Shen; David Barker
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

4.  Cytosine methylation profiles as a molecular marker in non-small cell lung cancer.

Authors:  Mathias Ehrich; John K Field; Triantafillos Liloglou; George Xinarianos; Paul Oeth; Matthew R Nelson; Charles R Cantor; Dirk van den Boom
Journal:  Cancer Res       Date:  2006-11-15       Impact factor: 12.701

Review 5.  Developmental origins of health and disease: brief history of the approach and current focus on epigenetic mechanisms.

Authors:  Pathik D Wadhwa; Claudia Buss; Sonja Entringer; James M Swanson
Journal:  Semin Reprod Med       Date:  2009-08-26       Impact factor: 1.303

6.  Modulation of imprinted gene network in placenta results in normal development of in vitro manipulated mouse embryos.

Authors:  Patricia Fauque; Marie-Anne Ripoche; Jörg Tost; Laurent Journot; Anne Gabory; Florence Busato; Anne Le Digarcher; Françoise Mondon; Ivo Gut; Pierre Jouannet; Daniel Vaiman; Luisa Dandolo; Hélène Jammes
Journal:  Hum Mol Genet       Date:  2010-02-11       Impact factor: 6.150

7.  Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia.

Authors:  S Deneberg; M Grövdal; M Karimi; M Jansson; H Nahi; A Corbacioglu; V Gaidzik; K Döhner; C Paul; T J Ekström; E Hellström-Lindberg; S Lehmann
Journal:  Leukemia       Date:  2010-03-18       Impact factor: 11.528

8.  Characterization of differentially methylated regions in 3 bovine imprinted genes: a model for studying human germ-cell and embryo development.

Authors:  T Hansmann; J Heinzmann; C Wrenzycki; U Zechner; H Niemann; T Haaf
Journal:  Cytogenet Genome Res       Date:  2010-12-16       Impact factor: 1.636

9.  Epigenetic reprogramming in mouse primordial germ cells.

Authors:  Petra Hajkova; Sylvia Erhardt; Natasha Lane; Thomas Haaf; Osman El-Maarri; Wolf Reik; Jörn Walter; M Azim Surani
Journal:  Mech Dev       Date:  2002-09       Impact factor: 1.882

10.  CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer.

Authors:  Yu-Wei Cheng; Hanna Pincas; Manny D Bacolod; Gunter Schemmann; Sarah F Giardina; Jianmin Huang; Sandra Barral; Kamran Idrees; Sajid A Khan; Zhaoshi Zeng; Shoshana Rosenberg; Daniel A Notterman; Jurg Ott; Philip Paty; Francis Barany
Journal:  Clin Cancer Res       Date:  2008-10-01       Impact factor: 12.531

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  10 in total

1.  Trichloroethylene exposure in mid-pregnancy decreased fetal weight and increased placental markers of oxidative stress in rats.

Authors:  Rita Loch-Caruso; Iman Hassan; Sean M Harris; Anjana Kumar; Faith Bjork; Lawrence H Lash
Journal:  Reprod Toxicol       Date:  2018-11-20       Impact factor: 3.143

2.  Blood DNA methylation as a potential biomarker of dementia: A systematic review.

Authors:  Peter D Fransquet; Paul Lacaze; Richard Saffery; John McNeil; Robyn Woods; Joanne Ryan
Journal:  Alzheimers Dement       Date:  2017-11-08       Impact factor: 21.566

3.  Variation in DNA methylation of human blood over a 1-year period using the Illumina MethylationEPIC array.

Authors:  Ina Zaimi; Dong Pei; Devin C Koestler; Carmen J Marsit; Immaculata De Vivo; Shelley S Tworoger; Alexandra E Shields; Karl T Kelsey; Dominique S Michaud
Journal:  Epigenetics       Date:  2018-10-21       Impact factor: 4.528

4.  Region of interest methylation analysis: a comparison of MSP with MS-HRM and direct BSP.

Authors:  Reem Akika; Zainab Awada; Nahed Mogharbil; Nathalie K Zgheib
Journal:  Mol Biol Rep       Date:  2017-07-04       Impact factor: 2.316

Review 5.  DNA Methylation Analysis: Choosing the Right Method.

Authors:  Sergey Kurdyukov; Martyn Bullock
Journal:  Biology (Basel)       Date:  2016-01-06

Review 6.  Epigenetics and Inflammatory Markers: A Systematic Review of the Current Evidence.

Authors:  Valentina Gonzalez-Jaramillo; Eliana Portilla-Fernandez; Marija Glisic; Trudy Voortman; Mohsen Ghanbari; Wichor Bramer; Rajiv Chowdhury; Tamar Nijsten; Abbas Dehghan; Oscar H Franco; Jana Nano
Journal:  Int J Inflam       Date:  2019-05-08

Review 7.  The Bright and Dark Side of DNA Methylation: A Matter of Balance.

Authors:  Marta Borchiellini; Simone Ummarino; Annalisa Di Ruscio
Journal:  Cells       Date:  2019-10-12       Impact factor: 6.600

8.  The Role of Dietary Extra Virgin Olive Oil and Corn Oil on the Alteration of Epigenetic Patterns in the Rat DMBA-Induced Breast Cancer Model.

Authors:  Cristina Rodríguez-Miguel; Raquel Moral; Raquel Escrich; Elena Vela; Montserrat Solanas; Eduard Escrich
Journal:  PLoS One       Date:  2015-09-24       Impact factor: 3.240

9.  Evodiamine, a Novel NOTCH3 Methylation Stimulator, Significantly Suppresses Lung Carcinogenesis in Vitro and in Vivo.

Authors:  Tao Su; Xia Yang; Jian-Hua Deng; Qiu-Ju Huang; Su-Chao Huang; Yan-Min Zhang; Hong-Ming Zheng; Ying Wang; Lin-Lin Lu; Zhong-Qiu Liu
Journal:  Front Pharmacol       Date:  2018-05-01       Impact factor: 5.810

Review 10.  DNA Methylation Validation Methods: a Coherent Review with Practical Comparison.

Authors:  Šárka Šestáková; Cyril Šálek; Hana Remešová
Journal:  Biol Proced Online       Date:  2019-10-01       Impact factor: 3.244

  10 in total

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