Literature DB >> 22669670

Methodological approaches to cytochrome P450 profiling in embryos.

Jared V Goldstone1, John J Stegeman.   

Abstract

Cytochrome P450 enzymes (CYPs) are heme thiolate proteins essential for vertebrate development and also play important roles in toxicology as well as normal metabolic function. CYP enzymes catalyze the oxidative biotransformation of many endogenous and exogenous chemicals, including steroids and eicosanoids, and drugs and other xenobiotic toxicants. Many CYPs have known for their potential roles in development, and many chemicals that cause developmental abnormalities are substrates for CYPs. The roles and regulation of most xenobiotic metabolizing CYPs during development are unknown, impeding understanding of mechanisms of developmental toxicity. The zebrafish (Danio rerio) has become one of the premier models in vertebrate developmental biology, in large part because of the logistical advantages of rapid external development, high adult maintenance density, and significant (bio)technological tool availability. The increasing use of zebrafish in drug discovery and mechanistic toxicology demands knowledge of CYP gene regulation and function. Here, we present methods to examine CYP expression during early development in zebrafish, with an emphasis on developmental microarrays.

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Year:  2012        PMID: 22669670      PMCID: PMC3949507          DOI: 10.1007/978-1-61779-867-2_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  33 in total

1.  Primer3 on the WWW for general users and for biologist programmers.

Authors:  S Rozen; H Skaletsky
Journal:  Methods Mol Biol       Date:  2000

2.  Genomics. Zebrafish--the canonical vertebrate.

Authors:  M C Fishman
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

Review 3.  Cytochrome P450s: coupling development and environment.

Authors:  I Stoilov
Journal:  Trends Genet       Date:  2001-11       Impact factor: 11.639

4.  Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data.

Authors:  E E Schadt; C Li; B Ellis; W H Wong
Journal:  J Cell Biochem Suppl       Date:  2001

5.  Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana.

Authors:  W Xu; S Bak; A Decker; S M Paquette; R Feyereisen; D W Galbraith
Journal:  Gene       Date:  2001-07-11       Impact factor: 3.688

6.  Association of multiple developmental defects and embryonic lethality with loss of microsomal NADPH-cytochrome P450 oxidoreductase.

Authors:  Anna L Shen; Kathleen A O'Leary; Charles B Kasper
Journal:  J Biol Chem       Date:  2001-12-12       Impact factor: 5.157

Review 7.  Roles of cytochrome p450 in development.

Authors:  I Stoilov; I Jansson; M Sarfarazi; J B Schenkman
Journal:  Drug Metabol Drug Interact       Date:  2001

8.  Comparative expression profiling of 40 mouse cytochrome P450 genes in embryonic and adult tissues.

Authors:  D Choudhary; I Jansson; J B Schenkman; M Sarfarazi; I Stoilov
Journal:  Arch Biochem Biophys       Date:  2003-06-01       Impact factor: 4.013

9.  Restriction of retinoic acid activity by Cyp26b1 is required for proper timing and patterning of osteogenesis during zebrafish development.

Authors:  Kathrin Laue; Martina Jänicke; Nikki Plaster; Carmen Sonntag; Matthias Hammerschmidt
Journal:  Development       Date:  2008-10-16       Impact factor: 6.868

10.  Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection.

Authors:  C Li; W H Wong
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

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