Literature DB >> 22669647

Protease bias in absolute protein quantitation.

Mao Peng, Nadia Taouatas, Salvatore Cappadona, Bas van Breukelen, Shabaz Mohammed, Arjen Scholten, Albert J R Heck.   

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Year:  2012        PMID： 22669647     DOI： 10.1038/nmeth.2031

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  7 in total

1.  A tissue-specific atlas of mouse protein phosphorylation and expression.

Authors:  Edward L Huttlin; Mark P Jedrychowski; Joshua E Elias; Tapasree Goswami; Ramin Rad; Sean A Beausoleil; Judit Villén; Wilhelm Haas; Mathew E Sowa; Steven P Gygi
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

2.  Computational prediction of proteotypic peptides for quantitative proteomics.

Authors:  Parag Mallick; Markus Schirle; Sharon S Chen; Mark R Flory; Hookeun Lee; Daniel Martin; Jeffrey Ranish; Brian Raught; Robert Schmitt; Thilo Werner; Bernhard Kuster; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2006-12-31       Impact factor: 54.908

3.  Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

Authors:  Sharon Gauci; Andreas O Helbig; Monique Slijper; Jeroen Krijgsveld; Albert J R Heck; Shabaz Mohammed
Journal:  Anal Chem       Date:  2009-06-01       Impact factor: 6.986

4.  Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

Authors:  Lyris M F de Godoy; Jesper V Olsen; Jürgen Cox; Michael L Nielsen; Nina C Hubner; Florian Fröhlich; Tobias C Walther; Matthias Mann
Journal:  Nature       Date:  2008-09-28       Impact factor: 49.962

5.  Global quantification of mammalian gene expression control.

Authors:  Björn Schwanhäusser; Dorothea Busse; Na Li; Gunnar Dittmar; Johannes Schuchhardt; Jana Wolf; Wei Chen; Matthias Selbach
Journal:  Nature       Date:  2011-05-19       Impact factor: 49.962

6.  Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Authors:  Peng Lu; Christine Vogel; Rong Wang; Xin Yao; Edward M Marcotte
Journal:  Nat Biotechnol       Date:  2006-12-24       Impact factor: 54.908

7.  Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans.

Authors:  Johan Malmström; Martin Beck; Alexander Schmidt; Vinzenz Lange; Eric W Deutsch; Ruedi Aebersold
Journal:  Nature       Date:  2009-07-15       Impact factor: 49.962
  7 in total
  27 in total

Review 1.  Mass spectrometry: A platform for biomarker discovery and validation for Alzheimer's and Parkinson's diseases.

Authors:  Eugene M Cilento; Lorrain Jin; Tessandra Stewart; Min Shi; Lifu Sheng; Jing Zhang
Journal:  J Neurochem       Date:  2019-01-31       Impact factor: 5.372

2.  Quantifying Homologous Proteins and Proteoforms.

Authors:  Dmitry Malioutov; Tianchi Chen; Edoardo Airoldi; Jacob Jaffe; Bogdan Budnik; Nikolai Slavov
Journal:  Mol Cell Proteomics       Date:  2018-10-03       Impact factor: 5.911

Review 3.  Next-generation proteomics: towards an integrative view of proteome dynamics.

Authors:  A F Maarten Altelaar; Javier Munoz; Albert J R Heck
Journal:  Nat Rev Genet       Date:  2012-12-04       Impact factor: 53.242

4.  Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells.

Authors:  Nils A Kulak; Garwin Pichler; Igor Paron; Nagarjuna Nagaraj; Matthias Mann
Journal:  Nat Methods       Date:  2014-02-02       Impact factor: 28.547

5.  Six alternative proteases for mass spectrometry-based proteomics beyond trypsin.

Authors:  Piero Giansanti; Liana Tsiatsiani; Teck Yew Low; Albert J R Heck
Journal:  Nat Protoc       Date:  2016-04-28       Impact factor: 13.491

6.  Modified MuDPIT separation identified 4488 proteins in a system-wide analysis of quiescence in yeast.

Authors:  Kristofor J Webb; Tao Xu; Sung Kyu Park; John R Yates
Journal:  J Proteome Res       Date:  2013-04-09       Impact factor: 4.466

7.  Daily rhythms in the cyanobacterium synechococcus elongatus probed by high-resolution mass spectrometry-based proteomics reveals a small defined set of cyclic proteins.

Authors:  Ana C L Guerreiro; Marco Benevento; Robert Lehmann; Bas van Breukelen; Harm Post; Piero Giansanti; A F Maarten Altelaar; Ilka M Axmann; Albert J R Heck
Journal:  Mol Cell Proteomics       Date:  2014-03-27       Impact factor: 5.911

8.  Enhancement of LacI binding in vivo.

Authors:  Manyu Du; Seth Kodner; Lu Bai
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

9.  Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients.

Authors:  David Y Chiang; Nicolas Lebesgue; David L Beavers; Katherina M Alsina; J Mirjam A Damen; Niels Voigt; Dobromir Dobrev; Xander H T Wehrens; Arjen Scholten
Journal:  J Am Coll Cardiol       Date:  2015-01-20       Impact factor: 24.094

10.  Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics.

Authors:  Marco Benevento; Serena Di Palma; Joost Snijder; Crystal L Moyer; Vijay S Reddy; Glen R Nemerow; Albert J R Heck
Journal:  J Biol Chem       Date:  2014-03-03       Impact factor: 5.157
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