Literature DB >> 22667560

ONIOM approach for non-adiabatic on-the-fly molecular dynamics demonstrated for the backbone controlled Dewar valence isomerization.

Benjamin P Fingerhut1, Sven Oesterling, Karin Haiser, Korbinian Heil, Andreas Glas, Wolfgang J Schreier, Wolfgang Zinth, Thomas Carell, Regina de Vivie-Riedle.   

Abstract

Non-adiabatic on-the-fly molecular dynamics (NA-O-MD) simulations require the electronic wavefunction, energy gradients, and derivative coupling vectors in every timestep. Thus, they are commonly restricted to the excited state dynamics of molecules with up to ≈20 atoms. We discuss an approximation that combines the ONIOM(QM:QM) method with NA-O-MD simulations to allow calculations for larger molecules. As a proof of principle we present the excited state dynamics of a (6-4)-lesion containing dinucleotide (63 atoms), and especially the importance to include the confinement effects of the DNA backbone. The method is able to include electron correlation on a high level of theory and offers an attractive alternative to QM:MM approaches for moderate sized systems with unknown force fields.

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Year:  2012        PMID: 22667560     DOI: 10.1063/1.4720090

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Monitoring Non-Adiabatic Dynamics of the RNA Base Uracil by UV-Pump-IR-Probe Spectroscopy.

Authors:  Benjamin P Fingerhut; Konstantin E Dorfman; Shaul Mukamel
Journal:  J Phys Chem Lett       Date:  2013-06-06       Impact factor: 6.475

2.  Time-resolved nuclear dynamics in bound and dissociating acetylene.

Authors:  C Burger; A Atia-Tul-Noor; T Schnappinger; H Xu; P Rosenberger; N Haram; S Beaulieu; F Légaré; A S Alnaser; R Moshammer; R T Sang; B Bergues; M S Schuurman; R de Vivie-Riedle; I V Litvinyuk; M F Kling
Journal:  Struct Dyn       Date:  2018-08-20       Impact factor: 2.920

3.  Probing the Conical Intersection Dynamics of the RNA Base Uracil by UV-Pump Stimulated-Raman-Probe Signals; Ab Initio Simulations.

Authors:  Benjamin P Fingerhut; Konstantin E Dorfman; Shaul Mukamel
Journal:  J Chem Theory Comput       Date:  2014-01-22       Impact factor: 6.006

4.  Monitoring conical intersections in the ring opening of furan by attosecond stimulated X-ray Raman spectroscopy.

Authors:  Weijie Hua; Sven Oesterling; Jason D Biggs; Yu Zhang; Hideo Ando; Regina de Vivie-Riedle; Benjamin P Fingerhut; Shaul Mukamel
Journal:  Struct Dyn       Date:  2015-10-09       Impact factor: 2.920

  4 in total

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