Literature DB >> 22665282

Haplotype inference.

Olivier Delaneau1, Jean-François Zagury.   

Abstract

The information carried by combination of alleles on the same chromosome, called haplotypes, is of crucial interest in several fields of modern genetics as population genetics or association studies. However, this information is usually lost by sequencing and needs, therefore, to be recovered by inference. In this chapter, we give a brief overview on the methods able to tackle this problem and some practical concerns to apply them on real data.

Mesh：

Year:  2012        PMID： 22665282     DOI： 10.1007/978-1-61779-870-2_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  7 in total

1.  Incomplete penetrance for isolated congenital asplenia in humans with mutations in translated and untranslated RPSA exons.

Authors:  Alexandre Bolze; Bertrand Boisson; Barbara Bosch; Alexander Antipenko; Matthieu Bouaziz; Paul Sackstein; Malik Chaker-Margot; Vincent Barlogis; Tracy Briggs; Elena Colino; Aurora C Elmore; Alain Fischer; Ferah Genel; Angela Hewlett; Maher Jedidi; Jadranka Kelecic; Renate Krüger; Cheng-Lung Ku; Dinakantha Kumararatne; Alain Lefevre-Utile; Sam Loughlin; Nizar Mahlaoui; Susanne Markus; Juan-Miguel Garcia; Mathilde Nizon; Matias Oleastro; Malgorzata Pac; Capucine Picard; Andrew J Pollard; Carlos Rodriguez-Gallego; Caroline Thomas; Horst Von Bernuth; Austen Worth; Isabelle Meyts; Maurizio Risolino; Licia Selleri; Anne Puel; Sebastian Klinge; Laurent Abel; Jean-Laurent Casanova
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-02       Impact factor: 11.205

2.  HLA-check: evaluating HLA data from SNP information.

Authors:  Marc Jeanmougin; Josselin Noirel; Cédric Coulonges; Jean-François Zagury
Journal:  BMC Bioinformatics       Date:  2017-07-11       Impact factor: 3.169

3.  Patterns of genetic structure and adaptive positive selection in the Lithuanian population from high-density SNP data.

Authors:  A Urnikyte; A Flores-Bello; M Mondal; A Molyte; D Comas; F Calafell; E Bosch; V Kučinskas
Journal:  Sci Rep       Date:  2019-06-24       Impact factor: 4.379

4.  Genomic and clinical predictors of lacosamide response in refractory epilepsies.

Authors:  Sinéad B Heavin; Mark McCormack; Stefan Wolking; Lisa Slattery; Nicole Walley; Andreja Avbersek; Jan Novy; Saurabh R Sinha; Rod Radtke; Colin Doherty; Pauls Auce; John Craig; Michael R Johnson; Bobby P C Koeleman; Roland Krause; Wolfram S Kunz; Anthony G Marson; Terence J O'Brien; Josemir W Sander; Graeme J Sills; Hreinn Stefansson; Pasquale Striano; Federico Zara; Chantal Depondt; Sanjay Sisodiya; David Goldstein; Holger Lerche; Gianpiero L Cavalleri; Norman Delanty
Journal:  Epilepsia Open       Date:  2019-09-25

5.  Validation of PHASE for deriving N-acetyltransferase 2 haplotypes in the Western Cape mixed ancestry population.

Authors:  Celeste Swart; Surita Meldau; Chad M Centner; Adrian D Marais; Fierdoz Omar
Journal:  Afr J Lab Med       Date:  2020-12-17

6.  Fine-Scale Genetic Structure in the United Arab Emirates Reflects Endogamous and Consanguineous Culture, Population History, and Geography.

Authors:  Katherine S Elliott; Marc Haber; Hinda Daggag; George B Busby; Rizwan Sarwar; Derek Kennet; Michael Petraglia; Lawrence J Petherbridge; Parisa Yavari; Frauke U Heard-Bey; Bindu Shobi; Tariq Ghulam; Dalia Haj; Alia Al Tikriti; Alshafi Mohammad; Suma Antony; Maitha Alyileili; Shatha Alaydaroos; Evelyn Lau; Mark Butler; Arash Yavari; Julian C Knight; Houman Ashrafian; Maha T Barakat
Journal:  Mol Biol Evol       Date:  2022-03-02       Impact factor: 16.240

7.  DNA glycosylases involved in base excision repair may be associated with cancer risk in BRCA1 and BRCA2 mutation carriers.

Authors:  Ana Osorio; Roger L Milne; Karoline Kuchenbaecker; Tereza Vaclová; Guillermo Pita; Rosario Alonso; Paolo Peterlongo; Ignacio Blanco; Miguel de la Hoya; Mercedes Duran; Orland Díez; Teresa Ramón Y Cajal; Irene Konstantopoulou; Cristina Martínez-Bouzas; Raquel Andrés Conejero; Penny Soucy; Lesley McGuffog; Daniel Barrowdale; Andrew Lee; Brita Arver; Johanna Rantala; Niklas Loman; Hans Ehrencrona; Olufunmilayo I Olopade; Mary S Beattie; Susan M Domchek; Katherine Nathanson; Timothy R Rebbeck; Banu K Arun; Beth Y Karlan; Christine Walsh; Jenny Lester; Esther M John; Alice S Whittemore; Mary B Daly; Melissa Southey; John Hopper; Mary B Terry; Saundra S Buys; Ramunas Janavicius; Cecilia M Dorfling; Elizabeth J van Rensburg; Linda Steele; Susan L Neuhausen; Yuan Chun Ding; Thomas V O Hansen; Lars Jønson; Bent Ejlertsen; Anne-Marie Gerdes; Mar Infante; Belén Herráez; Leticia Thais Moreno; Jeffrey N Weitzel; Josef Herzog; Kisa Weeman; Siranoush Manoukian; Bernard Peissel; Daniela Zaffaroni; Giulietta Scuvera; Bernardo Bonanni; Frederique Mariette; Sara Volorio; Alessandra Viel; Liliana Varesco; Laura Papi; Laura Ottini; Maria Grazia Tibiletti; Paolo Radice; Drakoulis Yannoukakos; Judy Garber; Steve Ellis; Debra Frost; Radka Platte; Elena Fineberg; Gareth Evans; Fiona Lalloo; Louise Izatt; Ros Eeles; Julian Adlard; Rosemarie Davidson; Trevor Cole; Diana Eccles; Jackie Cook; Shirley Hodgson; Carole Brewer; Marc Tischkowitz; Fiona Douglas; Mary Porteous; Lucy Side; Lisa Walker; Patrick Morrison; Alan Donaldson; John Kennedy; Claire Foo; Andrew K Godwin; Rita Katharina Schmutzler; Barbara Wappenschmidt; Kerstin Rhiem; Christoph Engel; Alfons Meindl; Nina Ditsch; Norbert Arnold; Hans Jörg Plendl; Dieter Niederacher; Christian Sutter; Shan Wang-Gohrke; Doris Steinemann; Sabine Preisler-Adams; Karin Kast; Raymonda Varon-Mateeva; Andrea Gehrig; Dominique Stoppa-Lyonnet; Olga M Sinilnikova; Sylvie Mazoyer; Francesca Damiola; Bruce Poppe; Kathleen Claes; Marion Piedmonte; Kathy Tucker; Floor Backes; Gustavo Rodríguez; Wendy Brewster; Katie Wakeley; Thomas Rutherford; Trinidad Caldés; Heli Nevanlinna; Kristiina Aittomäki; Matti A Rookus; Theo A M van Os; Lizet van der Kolk; J L de Lange; Hanne E J Meijers-Heijboer; A H van der Hout; Christi J van Asperen; Encarna B Gómez Garcia; Nicoline Hoogerbrugge; J Margriet Collée; Carolien H M van Deurzen; Rob B van der Luijt; Peter Devilee; Edith Olah; Conxi Lázaro; Alex Teulé; Mireia Menéndez; Anna Jakubowska; Cezary Cybulski; Jacek Gronwald; Jan Lubinski; Katarzyna Durda; Katarzyna Jaworska-Bieniek; Oskar Th Johannsson; Christine Maugard; Marco Montagna; Silvia Tognazzo; Manuel R Teixeira; Sue Healey; Curtis Olswold; Lucia Guidugli; Noralane Lindor; Susan Slager; Csilla I Szabo; Joseph Vijai; Mark Robson; Noah Kauff; Liying Zhang; Rohini Rau-Murthy; Anneliese Fink-Retter; Christian F Singer; Christine Rappaport; Daphne Geschwantler Kaulich; Georg Pfeiler; Muy-Kheng Tea; Andreas Berger; Catherine M Phelan; Mark H Greene; Phuong L Mai; Flavio Lejbkowicz; Irene Andrulis; Anna Marie Mulligan; Gord Glendon; Amanda Ewart Toland; Anders Bojesen; Inge Sokilde Pedersen; Lone Sunde; Mads Thomassen; Torben A Kruse; Uffe Birk Jensen; Eitan Friedman; Yael Laitman; Shani Paluch Shimon; Jacques Simard; Douglas F Easton; Kenneth Offit; Fergus J Couch; Georgia Chenevix-Trench; Antonis C Antoniou; Javier Benitez
Journal:  PLoS Genet       Date:  2014-04-03       Impact factor: 5.917
  7 in total

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