Literature DB >> 22664180

Sequence-independent VIDISCA-454 technique to discover new viruses in canine livers.

Mitzi van der Heijden1, Michel de Vries, Frank G van Steenbeek, Robert P Favier, Martin Deijs, Bas Brinkhof, Jan Rothuizen, Lia van der Hoek, Louis C Penning.   

Abstract

In many mammals, viruses cause hepatitis. Despite many efforts a specific virus responsible for canine idiopathic hepatitis has not been identified. The discovery of a viral etiology in canine hepatitis will promote the development of specific drugs and vaccines for the treatment of idiopathic hepatitis in dogs. The objective of this study was the application of the sequence-independent Virus Discovery cDNA-amplified fragment length polymorphism (VIDISCA) technique combined with high through-put sequencing on a Roche-454 sequencer to identify unknown viruses. Liver tissue of a dog with idiopathic acute hepatitis was cultured on a canine liver cell line and the cell culture medium was submitted to the VIDISCA-454 technique. Without prior knowledge of the viral species involved, this technique identified Canine adenovirus type 1 (CAV-1) as the infecting agent. This demonstrates the power of VIDISCA-454 to identify viruses, independent of preliminary information about the genomic sequence. Consequently, the strategy of propagation in this cell line followed by the VIDISCA-454 technique is valuable to identify the viral etiology of idiopathic hepatitis in dogs.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22664180     DOI: 10.1016/j.jviromet.2012.05.019

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  7 in total

Review 1.  Next-generation sequencing in clinical virology: Discovery of new viruses.

Authors:  Sibnarayan Datta; Raghvendra Budhauliya; Bidisha Das; Soumya Chatterjee; Vijay Veer
Journal:  World J Virol       Date:  2015-08-12

2.  A Versatile Processing Workflow to Enable Pathogen Detection in Clinical Samples from Organs Using VIDISCA.

Authors:  Alba Folgueiras-González; Robin van den Braak; Martin Deijs; Lia van der Hoek; Ad de Groof
Journal:  Diagnostics (Basel)       Date:  2021-04-27

3.  Unexplained diarrhoea in HIV-1 infected individuals.

Authors:  Bas B Oude Munnink; Marta Canuti; Martin Deijs; Michel de Vries; Maarten F Jebbink; Sjoerd Rebers; Richard Molenkamp; Formijn J van Hemert; Kevin Chung; Matthew Cotten; Fransje Snijders; Cees J A Sol; Lia van der Hoek
Journal:  BMC Infect Dis       Date:  2014-01-13       Impact factor: 3.090

Review 4.  Evolution of selective-sequencing approaches for virus discovery and virome analysis.

Authors:  Arvind Kumar; Satyapramod Murthy; Amit Kapoor
Journal:  Virus Res       Date:  2017-06-03       Impact factor: 3.303

5.  Dynamics of the Enteric Virome in a Swine Herd Affected by Non-PCV2/PRRSV Postweaning Wasting Syndrome.

Authors:  Alba Folgueiras-González; Robin van den Braak; Martin Deijs; Wikke Kuller; Steven Sietsma; Valentijn Thuring; Lia van der Hoek; Ad de Groof
Journal:  Viruses       Date:  2021-12-17       Impact factor: 5.048

6.  Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm.

Authors:  Matthew Cotten; Bas Oude Munnink; Marta Canuti; Martin Deijs; Simon J Watson; Paul Kellam; Lia van der Hoek
Journal:  PLoS One       Date:  2014-04-02       Impact factor: 3.240

7.  Viral Metagenomics on Cerebrospinal Fluid.

Authors:  Arthur W D Edridge; Martin Deijs; Ingeborg E van Zeggeren; Cormac M Kinsella; Maarten F Jebbink; Margreet Bakker; Diederik van de Beek; Matthijs C Brouwer; Lia van der Hoek
Journal:  Genes (Basel)       Date:  2019-04-30       Impact factor: 4.096

  7 in total

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