Literature DB >> 22660008

Quantification of "fuzzy" chemical concepts: a computational perspective.

Jérôme F Gonthier1, Stephan N Steinmann, Matthew D Wodrich, Clémence Corminboeuf.   

Abstract

Chemists recurrently utilize "fuzzy" chemical concepts (e.g. atomic charges, the chemical bond, strain, aromaticity, branching, etc.), which lack unique quantitative assessments but, nonetheless, are frequently employed as tools for understanding the intricacies of chemical behaviour. This tutorial review provides an overview of the computational schemes specifically developed to quantify four of the most commonly employed, yet debated, chemical concepts: the chemical bond, atomic charges, (hyper)conjugation, and molecular strain. The enhanced knowledge gained from these schemes not only helps in the depiction of molecules with unique properties, but also provides breadth to our fundamental understanding of chemistry. Nevertheless, the numerous existing methodologies often result in different interpretations that culminate in discrepancies. Through recent examples in the literature, guidelines are provided which illustrate the strengths and weaknesses of various schemes for each individual concept.

Entities:  

Year:  2012        PMID: 22660008     DOI: 10.1039/c2cs35037h

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  11 in total

1.  Nickel pincer model of the active site of lactate racemase involves ligand participation in hydride transfer.

Authors:  Tao Xu; Matthew D Wodrich; Rosario Scopelliti; Clemence Corminboeuf; Xile Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

Review 2.  Conformational energy range of ligands in protein crystal structures: The difficult quest for accurate understanding.

Authors:  Megan L Peach; Raul E Cachau; Marc C Nicklaus
Journal:  J Mol Recognit       Date:  2017-02-24       Impact factor: 2.137

3.  In-Situ Electronegativity and the Bridging of Chemical Bonding Concepts.

Authors:  Stefano Racioppi; Martin Rahm
Journal:  Chemistry       Date:  2021-11-12       Impact factor: 5.020

4.  Fast and highly chemoselective alkynylation of thiols with hypervalent iodine reagents enabled through a low energy barrier concerted mechanism.

Authors:  Reto Frei; Matthew D Wodrich; Durga Prasad Hari; Pierre-Antoine Borin; Clément Chauvier; Jérôme Waser
Journal:  J Am Chem Soc       Date:  2014-11-13       Impact factor: 15.419

Review 5.  Theory and practice of uncommon molecular electronic configurations.

Authors:  Ganna Gryn'ova; Michelle L Coote; Clemence Corminboeuf
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2015-10-26

6.  The Atomic Partial Charges Arboretum: Trying to See the Forest for the Trees.

Authors:  Minsik Cho; Nitai Sylvetsky; Sarah Eshafi; Golokesh Santra; Irena Efremenko; Jan M L Martin
Journal:  Chemphyschem       Date:  2020-03-23       Impact factor: 3.102

7.  Read between the Molecules: Computational Insights into Organic Semiconductors.

Authors:  Ganna Gryn'ova; Kun-Han Lin; Clémence Corminboeuf
Journal:  J Am Chem Soc       Date:  2018-11-19       Impact factor: 15.419

8.  Transferable Machine-Learning Model of the Electron Density.

Authors:  Andrea Grisafi; Alberto Fabrizio; Benjamin Meyer; David M Wilkins; Clemence Corminboeuf; Michele Ceriotti
Journal:  ACS Cent Sci       Date:  2018-12-26       Impact factor: 14.553

9.  Simultaneous Visualization of Covalent and Noncovalent Interactions Using Regions of Density Overlap.

Authors:  Piotr de Silva; Clémence Corminboeuf
Journal:  J Chem Theory Comput       Date:  2014-06-30       Impact factor: 6.006

10.  Intramolecular multi-bond strain: the unrecognized side of the dichotomy of conjugated systems.

Authors:  Yirong Mo; Huaiyu Zhang; Peifeng Su; Peter D Jarowski; Wei Wu
Journal:  Chem Sci       Date:  2016-05-20       Impact factor: 9.825

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.