Literature DB >> 22659238

Population-ethnic group specific genome variation allele frequency data: a querying and visualization journey.

Emmanouil Viennas1, Vassiliki Gkantouna, Marina Ioannou, Marianthi Georgitsi, Maria Rigou, Konstantinos Poulas, George P Patrinos, Giannis Tzimas.   

Abstract

National/ethnic mutation databases aim to document the genetic heterogeneity in various populations and ethnic groups worldwide. We have previously reported the development and upgrade of FINDbase (www.findbase.org), a database recording causative mutations and pharmacogenomic marker allele frequencies in various populations around the globe. Although this database has recently been upgraded, we continuously try to enhance its functionality by providing more advanced visualization tools that would further assist effective data querying and comparisons. We are currently experimenting in various visualization techniques on the existing FINDbase causative mutation data collection aiming to provide a dynamic research tool for the worldwide scientific community. We have developed an interactive web-based application for population-based mutation data retrieval. It supports sophisticated data exploration allowing users to apply advanced filtering criteria upon a set of multiple views of the underlying data collection and enables browsing the relationships between individual datasets in a novel and meaningful way.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22659238     DOI: 10.1016/j.ygeno.2012.05.009

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  1 in total

1.  Developments in FINDbase worldwide database for clinically relevant genomic variation allele frequencies.

Authors:  Petros Papadopoulos; Emmanouil Viennas; Vassiliki Gkantouna; Cristiana Pavlidis; Marina Bartsakoulia; Zafeiria-Marina Ioannou; Ilham Ratbi; Abdelaziz Sefiani; John Tsaknakis; Konstantinos Poulas; Giannis Tzimas; George P Patrinos
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

  1 in total

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