Literature DB >> 22647629

An online tool for calculation of free-energy balance for the renal inner medulla.

Ryan L Vilbig1, Abhijit Sarkar, Joseph Zischkau, Mark A Knepper, Trairak Pisitkun.   

Abstract

Concentrating models of the renal inner medulla can be classified according to external free-energy balance into passive models (positive values) and models that require an external energy source (negative values). Here we introduce an online computational tool that implements the equations of Stephenson and colleagues (Stephenson JL, Tewarson RP, Mejia R. Proc Natl Acad Sci USA 71: 1618-1622, 1974) to calculate external free-energy balance at steady state for the inner medulla (http://helixweb.nih.gov/ESBL/FreeEnergy). Here "external free-energy balance" means the sum of free-energy flows in all streams entering and leaving the inner medulla. The program first assures steady-state mass balance for all components and then tallies net external free-energy balance for the selected flow conditions. Its use is illustrated by calculating external free-energy balance for an example of the passive concentrating model taken from the original paper by Kokko and Rector (Kokko JP, Rector FC Jr. Kidney Int 2: 214-223, 1972).

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Year:  2012        PMID: 22647629      PMCID: PMC3433863          DOI: 10.1152/ajprenal.00147.2012

Source DB:  PubMed          Journal:  Am J Physiol Renal Physiol        ISSN: 1522-1466


  16 in total

1.  Countercurrent multiplication may not explain the axial osmolality gradient in the outer medulla of the rat kidney.

Authors:  Anita T Layton; Harold E Layton
Journal:  Am J Physiol Renal Physiol       Date:  2011-07-13

2.  UT-A2: a 55-kDa urea transporter in thin descending limb whose abundance is regulated by vasopressin.

Authors:  J B Wade; A J Lee; J Liu; C A Ecelbarger; C Mitchell; A D Bradford; J Terris; G H Kim; M A Knepper
Journal:  Am J Physiol Renal Physiol       Date:  2000-01

3.  The structural organization of the mouse kidney.

Authors:  W Kriz; H Koepsell
Journal:  Z Anat Entwicklungsgesch       Date:  1974

4.  Quantitative analysis of mass and energy balance in non-ideal models of the renal counterflow system.

Authors:  J L Stephenson; R P Tewarson; R Mejia
Journal:  Proc Natl Acad Sci U S A       Date:  1974-05       Impact factor: 11.205

5.  Concentration of urine in a central core model of the renal counterflow system.

Authors:  J L Stephenson
Journal:  Kidney Int       Date:  1972-08       Impact factor: 10.612

6.  Countercurrent multiplication system without active transport in inner medulla.

Authors:  J P Kokko; F C Rector
Journal:  Kidney Int       Date:  1972-10       Impact factor: 10.612

7.  Urea secretion by the straight segment of the proximal tubule.

Authors:  S Kawamura; J P Kokko
Journal:  J Clin Invest       Date:  1976-09       Impact factor: 14.808

8.  Urea transport in nephron segments from medullary rays of rabbits.

Authors:  M A Knepper
Journal:  Am J Physiol       Date:  1983-06

9.  Urea transport in isolated thick ascending limbs and collecting ducts from rats.

Authors:  M A Knepper
Journal:  Am J Physiol       Date:  1983-11

10.  Effect of arginine vasopressin on renal medullary blood flow. A videomicroscopic study in the rat.

Authors:  B Zimmerhackl; C R Robertson; R L Jamison
Journal:  J Clin Invest       Date:  1985-08       Impact factor: 14.808

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  2 in total

Review 1.  Comparative physiology and architecture associated with the mammalian urine concentrating mechanism: role of inner medullary water and urea transport pathways in the rodent medulla.

Authors:  Thomas L Pannabecker
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2013-01-30       Impact factor: 3.619

2.  Thermodynamic considerations in renal separation processes.

Authors:  Robert H Louw; David M Rubin; David Glasser; Robyn F R Letts; Diane Hildebrandt
Journal:  Theor Biol Med Model       Date:  2017-01-26       Impact factor: 2.432

  2 in total

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