Literature DB >> 22647609

Nucleotide-dependent conformations of FtsZ dimers and force generation observed through molecular dynamics simulations.

Jen Hsin1, Ajay Gopinathan, Kerwyn C Huang.   

Abstract

The bacterial cytoskeletal protein FtsZ is a GTPase that is thought to provide mechanical constriction force via an unidentified mechanism. Purified FtsZ polymerizes into filaments with varying structures in vitro: while GTP-bound FtsZ assembles into straight or gently curved filaments, GDP-bound FtsZ forms highly curved filaments, prompting the hypothesis that a difference in the inherent curvature of FtsZ filaments provides mechanical force. However, no nucleotide-dependent structural transition of FtsZ monomers has been observed to support this force generation model. Here, we present a series of all-atom molecular dynamics simulations probing the effects of nucleotide binding on the structure of an FtsZ dimer. We found that the FtsZ-dimer structure is dependent on nucleotide-binding state. While a GTP-bound FtsZ dimer retained a firm monomer-monomer contact, a GDP-bound FtsZ dimer lost some of the monomer-monomer association, leading to a "hinge-opening" event that resulted in a more bent dimer, while leaving each monomer structure largely unaffected. We constructed models of FtsZ filaments and found that a GDP-FtsZ filament is much more curved than a GTP-FtsZ filament, with the degree of curvature matching prior experimental data. FtsZ dynamics were used to estimate the amount of force an FtsZ filament could exert when hydrolysis occurs (20-30 pN per monomer). This magnitude of force is sufficient to direct inward cell-wall growth during division, and to produce the observed degree of membrane pinching in liposomes. Taken together, our data provide molecular-scale insight on the origin of FtsZ-based constriction force, and the mechanism underlying prokaryotic cell division.

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Year:  2012        PMID: 22647609      PMCID: PMC3386107          DOI: 10.1073/pnas.1120761109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

1.  Polymerization of Ftsz, a bacterial homolog of tubulin. is assembly cooperative?

Authors:  L Romberg; M Simon; H P Erickson
Journal:  J Biol Chem       Date:  2001-01-04       Impact factor: 5.157

2.  Assembly of an FtsZ mutant deficient in GTPase activity has implications for FtsZ assembly and the role of the Z ring in cell division.

Authors:  A Mukherjee; C Saez; J Lutkenhaus
Journal:  J Bacteriol       Date:  2001-12       Impact factor: 3.490

3.  Mutants of FtsZ targeting the protofilament interface: effects on cell division and GTPase activity.

Authors:  Sambra D Redick; Jesse Stricker; Gina Briscoe; Harold P Erickson
Journal:  J Bacteriol       Date:  2005-04       Impact factor: 3.490

4.  Modeling the physics of FtsZ assembly and force generation.

Authors:  Harold P Erickson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-28       Impact factor: 11.205

5.  Force generation by a dynamic Z-ring in Escherichia coli cell division.

Authors:  Jun F Allard; Eric N Cytrynbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-29       Impact factor: 11.205

Review 6.  Bacterial cell division: assembly, maintenance and disassembly of the Z ring.

Authors:  David W Adams; Jeff Errington
Journal:  Nat Rev Microbiol       Date:  2009-09       Impact factor: 60.633

7.  Visualization of single Escherichia coli FtsZ filament dynamics with atomic force microscopy.

Authors:  Jesús Mingorance; Michael Tadros; Miguel Vicente; José Manuel González; Germán Rivas; Marisela Vélez
Journal:  J Biol Chem       Date:  2005-03-26       Impact factor: 5.157

8.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

9.  In vivo structure of the E. coli FtsZ-ring revealed by photoactivated localization microscopy (PALM).

Authors:  Guo Fu; Tao Huang; Jackson Buss; Carla Coltharp; Zach Hensel; Jie Xiao
Journal:  PLoS One       Date:  2010-09-13       Impact factor: 3.240

10.  Site-specific mutations of FtsZ--effects on GTPase and in vitro assembly.

Authors:  C Lu; J Stricker; H P Erickson
Journal:  BMC Microbiol       Date:  2001-05-24       Impact factor: 3.605

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  31 in total

1.  FtsZ protofilaments use a hinge-opening mechanism for constrictive force generation.

Authors:  Ying Li; Jen Hsin; Lingyun Zhao; Yiwen Cheng; Weina Shang; Kerwyn Casey Huang; Hong-Wei Wang; Sheng Ye
Journal:  Science       Date:  2013-07-26       Impact factor: 47.728

2.  Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop.

Authors:  Takashi Matsui; Xuerong Han; Jian Yu; Min Yao; Isao Tanaka
Journal:  J Biol Chem       Date:  2013-12-17       Impact factor: 5.157

3.  Understanding nucleotide-regulated FtsZ filament dynamics and the monomer assembly switch with large-scale atomistic simulations.

Authors:  Erney Ramírez-Aportela; José Ramón López-Blanco; José Manuel Andreu; Pablo Chacón
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

4.  Shape Selection of Surface-Bound Helical Filaments: Biopolymers on Curved Membranes.

Authors:  David A Quint; Ajay Gopinathan; Gregory M Grason
Journal:  Biophys J       Date:  2016-10-04       Impact factor: 4.033

5.  FtsZ Constriction Force - Curved Protofilaments Bending Membranes.

Authors:  Harold P Erickson; Masaki Osawa
Journal:  Subcell Biochem       Date:  2017

Review 6.  Divided we stand: splitting synthetic cells for their proliferation.

Authors:  Yaron Caspi; Cees Dekker
Journal:  Syst Synth Biol       Date:  2014-05-27

7.  Effects of polymerization and nucleotide identity on the conformational dynamics of the bacterial actin homolog MreB.

Authors:  Alexandre Colavin; Jen Hsin; Kerwyn Casey Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

Review 8.  Redefining the roles of the FtsZ-ring in bacterial cytokinesis.

Authors:  Jie Xiao; Erin D Goley
Journal:  Curr Opin Microbiol       Date:  2016-09-10       Impact factor: 7.934

9.  Cell shape can mediate the spatial organization of the bacterial cytoskeleton.

Authors:  Siyuan Wang; Ned S Wingreen
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

10.  De novo morphogenesis in L-forms via geometric control of cell growth.

Authors:  Gabriel Billings; Nikolay Ouzounov; Tristan Ursell; Samantha M Desmarais; Joshua Shaevitz; Zemer Gitai; Kerwyn Casey Huang
Journal:  Mol Microbiol       Date:  2014-07-23       Impact factor: 3.501

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