Literature DB >> 22646845

Direct visualization of transient thermal response of a DNA origami.

Jie Song1, Jean-Michel Arbona, Zhao Zhang, Lei Liu, Erqing Xie, Juan Elezgaray, Jean-Pierre Aime, Kurt Vesterager Gothelf, Flemming Besenbacher, Mingdong Dong.   

Abstract

The DNA origami approach enables the construction of complex objects from DNA strands. A fundamental understanding of the kinetics and thermodynamics of DNA origami assembly is extremely important for building large DNA structures with multifunctionality. Here both experimental and theoretical studies of DNA origami melting were carried out in order to reveal the reversible association/disassociation process. Furthermore, by careful control of the temperature cycling via in situ thermally controlled atomic force microscopy, the self-assembly process of a rectangular DNA origami tile was directly visualized, unveiling key mechanisms underlying their structural and thermodynamic features.

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Year:  2012        PMID: 22646845     DOI: 10.1021/ja3017939

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Guiding the folding pathway of DNA origami.

Authors:  Katherine E Dunn; Frits Dannenberg; Thomas E Ouldridge; Marta Kwiatkowska; Andrew J Turberfield; Jonathan Bath
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

2.  Preparation of Mica and Silicon Substrates for DNA Origami Analysis and Experimentation.

Authors:  Michelle A Pillers; Rebecca Shute; Adam Farchone; Keenan P Linder; Rose Doerfler; Corey Gavin; Valerie Goss; Marya Lieberman
Journal:  J Vis Exp       Date:  2015-07-23       Impact factor: 1.355

3.  Molecularly Regulated Reversible DNA Polymerization.

Authors:  Niancao Chen; Xuechen Shi; Yong Wang
Journal:  Angew Chem Int Ed Engl       Date:  2016-04-21       Impact factor: 15.336

4.  Quantifying quality in DNA self-assembly.

Authors:  Klaus F Wagenbauer; Christian H Wachauf; Hendrik Dietz
Journal:  Nat Commun       Date:  2014-04-22       Impact factor: 14.919

5.  Cooperativity-based modeling of heterotypic DNA nanostructure assembly.

Authors:  Anastasia Shapiro; Avital Hozeh; Olga Girshevitz; Almogit Abu-Horowitz; Ido Bachelet
Journal:  Nucleic Acids Res       Date:  2015-06-13       Impact factor: 16.971

6.  The importance of thermodynamics for molecular systems, and the importance of molecular systems for thermodynamics.

Authors:  Thomas E Ouldridge
Journal:  Nat Comput       Date:  2017-11-21       Impact factor: 1.690

Review 7.  Insights into the Structure and Energy of DNA Nanoassemblies.

Authors:  Andreas Jaekel; Pascal Lill; Stephen Whitelam; Barbara Saccà
Journal:  Molecules       Date:  2020-11-24       Impact factor: 4.411

8.  Enzyme-guided DNA Sewing Architecture.

Authors:  In Hyun Song; Seung Won Shin; Kyung Soo Park; Yves Lansac; Yun Hee Jang; Soong Ho Um
Journal:  Sci Rep       Date:  2015-12-04       Impact factor: 4.379

9.  Direct observation and rational design of nucleation behavior in addressable self-assembly.

Authors:  Martin Sajfutdinow; William M Jacobs; Aleks Reinhardt; Christoph Schneider; David M Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

10.  Sites of high local frustration in DNA origami.

Authors:  Richard Kosinski; Ann Mukhortava; Wolfgang Pfeifer; Andrea Candelli; Philipp Rauch; Barbara Saccà
Journal:  Nat Commun       Date:  2019-03-05       Impact factor: 14.919

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