Literature DB >> 22644868

Development of PowerMap: a software package for statistical power calculation in neuroimaging studies.

Karen E Joyce1, Satoru Hayasaka.   

Abstract

Although there are a number of statistical software tools for voxel-based massively univariate analysis of neuroimaging data, such as fMRI (functional MRI), PET (positron emission tomography), and VBM (voxel-based morphometry), very few software tools exist for power and sample size calculation for neuroimaging studies. Unlike typical biomedical studies, outcomes from neuroimaging studies are 3D images of correlated voxels, requiring a correction for massive multiple comparisons. Thus, a specialized power calculation tool is needed for planning neuroimaging studies. To facilitate this process, we developed a software tool specifically designed for neuroimaging data. The software tool, called PowerMap, implements theoretical power calculation algorithms based on non-central random field theory. It can also calculate power for statistical analyses with FDR (false discovery rate) corrections. This GUI (graphical user interface)-based tool enables neuroimaging researchers without advanced knowledge in imaging statistics to calculate power and sample size in the form of 3D images. In this paper, we provide an overview of the statistical framework behind the PowerMap tool. Three worked examples are also provided, a regression analysis, an ANOVA (analysis of variance), and a two-sample T-test, in order to demonstrate the study planning process with PowerMap. We envision that PowerMap will be a great aide for future neuroimaging research.

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Year:  2012        PMID: 22644868      PMCID: PMC4426870          DOI: 10.1007/s12021-012-9152-3

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  21 in total

1.  Robust smoothness estimation in statistical parametric maps using standardized residuals from the general linear model.

Authors:  S J Kiebel; J B Poline; K J Friston; A P Holmes; K J Worsley
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2.  Validating cluster size inference: random field and permutation methods.

Authors:  Satoru Hayasaka; Thomas E Nichols
Journal:  Neuroimage       Date:  2003-12       Impact factor: 6.556

3.  Estimating sample size in functional MRI (fMRI) neuroimaging studies: statistical power analyses.

Authors:  John E Desmond; Gary H Glover
Journal:  J Neurosci Methods       Date:  2002-08-30       Impact factor: 2.390

4.  An empirical investigation into the number of subjects required for an event-related fMRI study.

Authors:  Kevin Murphy; Hugh Garavan
Journal:  Neuroimage       Date:  2004-06       Impact factor: 6.556

5.  A unified statistical approach for determining significant signals in images of cerebral activation.

Authors:  K J Worsley; S Marrett; P Neelin; A C Vandal; K J Friston; A C Evans
Journal:  Hum Brain Mapp       Date:  1996       Impact factor: 5.038

6.  An improved theoretical P value for SPMs based on discrete local maxima.

Authors:  K J Worsley
Journal:  Neuroimage       Date:  2005-08-25       Impact factor: 6.556

Review 7.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

8.  Power calculation for group fMRI studies accounting for arbitrary design and temporal autocorrelation.

Authors:  Jeanette A Mumford; Thomas E Nichols
Journal:  Neuroimage       Date:  2007-08-19       Impact factor: 6.556

9.  Mapping voxel-based statistical power on parametric images.

Authors:  J D Van Horn; T M Ellmore; G Esposito; K F Berman
Journal:  Neuroimage       Date:  1998-02       Impact factor: 6.556

10.  A cognitive training intervention increases resting cerebral blood flow in healthy older adults.

Authors:  Jennifer L Mozolic; Satoru Hayasaka; Paul J Laurienti
Journal:  Front Hum Neurosci       Date:  2010-03-12       Impact factor: 3.169

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  11 in total

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Authors:  Jeanette A Mumford
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2.  Feedback-driven trial-by-trial learning in autism spectrum disorders.

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Journal:  Am J Psychiatry       Date:  2014-10-31       Impact factor: 18.112

3.  Good practice in food-related neuroimaging.

Authors:  Paul A M Smeets; Alain Dagher; Todd A Hare; Stephanie Kullmann; Laura N van der Laan; Russell A Poldrack; Hubert Preissl; Dana Small; Eric Stice; Maria G Veldhuizen
Journal:  Am J Clin Nutr       Date:  2019-03-01       Impact factor: 7.045

Review 4.  A methodological assessment of studies that use voxel-based morphometry to study neural changes in tinnitus patients.

Authors:  Nicholas Scott-Wittenborn; Omar A Karadaghy; Jay F Piccirillo; Jonathan E Peelle
Journal:  Hear Res       Date:  2017-09-11       Impact factor: 3.208

Review 5.  A Hitchhiker's Guide to Functional Magnetic Resonance Imaging.

Authors:  José M Soares; Ricardo Magalhães; Pedro S Moreira; Alexandre Sousa; Edward Ganz; Adriana Sampaio; Victor Alves; Paulo Marques; Nuno Sousa
Journal:  Front Neurosci       Date:  2016-11-10       Impact factor: 4.677

Review 6.  How to Perform and Interpret Functional Magnetic Resonance Imaging Studies in Functional Gastrointestinal Disorders.

Authors:  In-Seon Lee; Hubert Preissl; Paul Enck
Journal:  J Neurogastroenterol Motil       Date:  2017-04-30       Impact factor: 4.924

7.  Testing the sensitivity of Tract-Based Spatial Statistics to simulated treatment effects in preterm neonates.

Authors:  Gareth Ball; James P Boardman; Tomoki Arichi; Nazakat Merchant; Daniel Rueckert; A David Edwards; Serena J Counsell
Journal:  PLoS One       Date:  2013-07-03       Impact factor: 3.240

Review 8.  Lessons of ALS imaging: Pitfalls and future directions - A critical review.

Authors:  Peter Bede; Orla Hardiman
Journal:  Neuroimage Clin       Date:  2014-02-27       Impact factor: 4.881

9.  The relation between statistical power and inference in fMRI.

Authors:  Henk R Cremers; Tor D Wager; Tal Yarkoni
Journal:  PLoS One       Date:  2017-11-20       Impact factor: 3.240

10.  Aberrant Cerebellar-Cerebral Functional Connectivity in Children and Adolescents With Autism Spectrum Disorder.

Authors:  Ryuzo Hanaie; Ikuko Mohri; Kuriko Kagitani-Shimono; Masaya Tachibana; Junko Matsuzaki; Ikuko Hirata; Fumiyo Nagatani; Yoshiyuki Watanabe; Taiichi Katayama; Masako Taniike
Journal:  Front Hum Neurosci       Date:  2018-11-13       Impact factor: 3.169

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