Literature DB >> 22641181

A new paradigm emerges from the study of de novo mutations in the context of neurodevelopmental disease.

C S Ku1, C Polychronakos, E K Tan, N Naidoo, Y Pawitan, D H Roukos, M Mort, D N Cooper.   

Abstract

The study of de novo point mutations (new germline mutations arising from the gametes of the parents) remained largely static until the arrival of next-generation sequencing technologies, which made both whole-exome sequencing (WES) and whole-genome sequencing (WGS) feasible in practical terms. Single nucleotide polymorphism genotyping arrays have been used to identify de novo copy-number variants in a number of common neurodevelopmental conditions such as schizophrenia and autism. By contrast, as point mutations and microlesions occurring de novo are refractory to analysis by these microarray-based methods, little was known about either their frequency or impact upon neurodevelopmental disease, until the advent of WES. De novo point mutations have recently been implicated in schizophrenia, autism and mental retardation through the WES of case-parent trios. Taken together, these findings strengthen the hypothesis that the occurrence of de novo mutations could account for the high prevalence of such diseases that are associated with a marked reduction in fecundity. De novo point mutations are also known to be responsible for many sporadic cases of rare dominant mendelian disorders such as Kabuki syndrome, Schinzel-Giedion syndrome and Bohring-Opitz syndrome. These disorders share a common feature in that they are all characterized by intellectual disability. In summary, recent WES studies of neurodevelopmental and neuropsychiatric disease have provided new insights into the role of de novo mutations in these disorders. Our knowledge of de novo mutations is likely to be further accelerated by WGS. However, the collection of case-parent trios will be a prerequisite for such studies. This review aims to discuss recent developments in the study of de novo mutations made possible by technological advances in DNA sequencing.

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Year:  2012        PMID: 22641181     DOI: 10.1038/mp.2012.58

Source DB:  PubMed          Journal:  Mol Psychiatry        ISSN: 1359-4184            Impact factor:   15.992


  37 in total

1.  Resequencing and association analysis of PTPRA, a possible susceptibility gene for schizophrenia and autism spectrum disorders.

Authors:  Jingrui Xing; Chenyao Wang; Hiroki Kimura; Yuto Takasaki; Shohko Kunimoto; Akira Yoshimi; Yukako Nakamura; Takayoshi Koide; Masahiro Banno; Itaru Kushima; Yota Uno; Takashi Okada; Branko Aleksic; Masashi Ikeda; Nakao Iwata; Norio Ozaki
Journal:  PLoS One       Date:  2014-11-13       Impact factor: 3.240

2.  Incorporating Functional Information in Tests of Excess De Novo Mutational Load.

Authors:  Yu Jiang; Yujun Han; Slavé Petrovski; Kouros Owzar; David B Goldstein; Andrew S Allen
Journal:  Am J Hum Genet       Date:  2015-07-30       Impact factor: 11.025

3.  De Novo Variants in TAOK1 Cause Neurodevelopmental Disorders.

Authors:  Marija Dulovic-Mahlow; Joanne Trinh; Krishna Kumar Kandaswamy; Geir Julius Braathen; Nataliya Di Donato; Elisa Rahikkala; Skadi Beblo; Martin Werber; Victor Krajka; Øyvind L Busk; Hauke Baumann; Nouriya Abbas Al-Sannaa; Frauke Hinrichs; Rabea Affan; Nir Navot; Mohammed A Al Balwi; Gabriela Oprea; Øystein L Holla; Maximilian E R Weiss; Rami A Jamra; Anne-Karin Kahlert; Shivendra Kishore; Kristian Tveten; Melissa Vos; Arndt Rolfs; Katja Lohmann
Journal:  Am J Hum Genet       Date:  2019-06-20       Impact factor: 11.025

4.  A genetic counselor's guide to using next-generation sequencing in clinical practice.

Authors:  Flavia M Facio; Kristy Lee; Julianne M O'Daniel
Journal:  J Genet Couns       Date:  2013-10-24       Impact factor: 2.537

5.  Genes with de novo mutations are shared by four neuropsychiatric disorders discovered from NPdenovo database.

Authors:  Jinchen Li; Tao Cai; Yi Jiang; Huiqian Chen; Xin He; Chao Chen; Xianfeng Li; Qianzhi Shao; Xia Ran; Zhongshan Li; Kun Xia; Chunyu Liu; Zhong Sheng Sun; Jinyu Wu
Journal:  Mol Psychiatry       Date:  2015-04-07       Impact factor: 15.992

6.  Laparoscopic total gastrectomy and gastric cancer genome architecture: lessons, cautions, and promises.

Authors:  Christof Hottenrott
Journal:  Surg Endosc       Date:  2013-05-10       Impact factor: 4.584

7.  Exome sequencing identifies de novo gain of function missense mutation in KCND2 in identical twins with autism and seizures that slows potassium channel inactivation.

Authors:  Hane Lee; Meng-chin A Lin; Harley I Kornblum; Diane M Papazian; Stanley F Nelson
Journal:  Hum Mol Genet       Date:  2014-02-05       Impact factor: 6.150

8.  Laparoscopic resections and ENCODE-guided genomics to advance surgery and oncology.

Authors:  Christof Hottenrott
Journal:  Surg Endosc       Date:  2014-02-25       Impact factor: 4.584

Review 9.  Next-generation sequencing diagnostics for neurological diseases/disorders: from a clinical perspective.

Authors:  Jia Nee Foo; Jianjun Liu; Eng-King Tan
Journal:  Hum Genet       Date:  2013-03-23       Impact factor: 4.132

10.  De novo missense variants in PPP2R5D are associated with intellectual disability, macrocephaly, hypotonia, and autism.

Authors:  Linshan Shang; Lindsay B Henderson; Megan T Cho; Donald S Petrey; Chin-To Fong; Katrina M Haude; Natasha Shur; Julie Lundberg; Natalie Hauser; Jason Carmichael; Jeffrey Innis; Jane Schuette; Yvonne W Wu; Shailesh Asaikar; Margaret Pearson; Leandra Folk; Kyle Retterer; Kristin G Monaghan; Wendy K Chung
Journal:  Neurogenetics       Date:  2015-11-17       Impact factor: 2.660

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