Literature DB >> 22641155

Inclusive sharing of mass spectrometry imaging data requires a converter for all.

Alan M Race1, Iain B Styles2, Josephine Bunch3.   

Abstract

With continued efforts towards a single MSI data format, data conversion routines must be made universally available. The benefits of a common imaging format, imzML, are slowly becoming more widely appreciated but the format remains to be used by only a small proportion of imaging groups. Increased awareness amongst researchers and continued support from major MS vendors in providing tools for converting proprietary formats into imzML are likely to result in a rapidly increasing uptake of the format. It is important that this does not lead to the exclusion of researchers using older or unsupported instruments. We describe an open source converter, imzMLConverter, to ensure against this. We propose that proprietary formats should first be converted to mzML using one of the widely available converters, such as msconvert and then use imzMLConverter to convert mzML to imzML. This will allow a wider audience to benefit from the imzML format immediately.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22641155     DOI: 10.1016/j.jprot.2012.05.035

Source DB:  PubMed          Journal:  J Proteomics        ISSN: 1874-3919            Impact factor:   4.044


  72 in total

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Journal:  Anal Chem       Date:  2015-12-30       Impact factor: 6.986

2.  Automatic 3D Nonlinear Registration of Mass Spectrometry Imaging and Magnetic Resonance Imaging Data.

Authors:  Walid M Abdelmoula; Michael S Regan; Begona G C Lopez; Elizabeth C Randall; Sean Lawler; Ann C Mladek; Michal O Nowicki; Bianca M Marin; Jeffrey N Agar; Kristin R Swanson; Tina Kapur; Jann N Sarkaria; William Wells; Nathalie Y R Agar
Journal:  Anal Chem       Date:  2019-04-22       Impact factor: 6.986

3.  Infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) mass spectrometry imaging analysis of endogenous metabolites in cherry tomatoes.

Authors:  M Caleb Bagley; Crystal L Pace; Måns Ekelöf; David C Muddiman
Journal:  Analyst       Date:  2020-08-10       Impact factor: 4.616

4.  Quantitative SIMS Imaging of Agar-Based Microbial Communities.

Authors:  Sage J B Dunham; Joanna F Ellis; Nameera F Baig; Nydia Morales-Soto; Tianyuan Cao; Joshua D Shrout; Paul W Bohn; Jonathan V Sweedler
Journal:  Anal Chem       Date:  2018-04-13       Impact factor: 6.986

5.  Probe-Substrate Distance Control in Desorption Electrospray Ionization.

Authors:  Tyler J Yarger; Elizabeth M Yuill; Lane A Baker
Journal:  J Am Soc Mass Spectrom       Date:  2017-11-27       Impact factor: 3.109

6.  Influence of Desorption Conditions on Analyte Sensitivity and Internal Energy in Discrete Tissue or Whole Body Imaging by IR-MALDESI.

Authors:  Elias P Rosen; Mark T Bokhart; H Troy Ghashghaei; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2015-04-04       Impact factor: 3.109

7.  Analysis of Urine, Oral fluid and Fingerprints by Liquid Extraction Surface Analysis Coupled to High Resolution MS and MS/MS - Opportunities for Forensic and Biomedical Science.

Authors:  Melanie Bailey; Elizabeth C Randall; Catia Costa; Tara L Salter; Alan M Race; Marcel de Puit; Mattijs Koeberg; Mark Baumert; Josephine Bunch
Journal:  Anal Methods       Date:  2016-03-24       Impact factor: 2.896

8.  IR-MALDESI Mass Spectrometry Imaging at 50 Micron Spatial Resolution.

Authors:  Mark T Bokhart; Jeffrey Manni; Kenneth P Garrard; Måns Ekelöf; Milad Nazari; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2017-07-18       Impact factor: 3.109

9.  para-Nitroaniline is a promising matrix for MALDI-MS imaging on intermediate pressure MS systems.

Authors:  Rory T Steven; Alan M Race; Josephine Bunch
Journal:  J Am Soc Mass Spectrom       Date:  2013-03-02       Impact factor: 3.109

10.  MSiReader: an open-source interface to view and analyze high resolving power MS imaging files on Matlab platform.

Authors:  Guillaume Robichaud; Kenneth P Garrard; Jeremy A Barry; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2013-03-28       Impact factor: 3.109

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