Literature DB >> 22639262

Access and use of the GUDMAP database of genitourinary development.

Jamie A Davies1, Melissa H Little, Bruce Aronow, Jane Armstrong, Jane Brennan, Sue Lloyd-MacGilp, Chris Armit, Simon Harding, Xinjun Piu, Yogmatee Roochun, Bernard Haggarty, Derek Houghton, Duncan Davidson, Richard Baldock.   

Abstract

The Genitourinary Development Molecular Atlas Project (GUDMAP) aims to document gene expression across time and space in the developing urogenital system of the mouse, and to provide access to a variety of relevant practical and educational resources. Data come from microarray gene expression profiling (from laser-dissected and FACS-sorted samples) and in situ hybridization at both low (whole-mount) and high (section) resolutions. Data are annotated to a published, high-resolution anatomical ontology and can be accessed using a variety of search interfaces. Here, we explain how to run typical queries on the database, by gene or anatomical location, how to view data, how to perform complex queries, and how to submit data.

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Year:  2012        PMID: 22639262     DOI: 10.1007/978-1-61779-851-1_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  Integration of Cistromic and Transcriptomic Analyses Identifies Nphs2, Mafb, and Magi2 as Wilms' Tumor 1 Target Genes in Podocyte Differentiation and Maintenance.

Authors:  Lihua Dong; Stefan Pietsch; Zenglai Tan; Birgit Perner; Ralph Sierig; Dagmar Kruspe; Marco Groth; Ralph Witzgall; Hermann-Josef Gröne; Matthias Platzer; Christoph Englert
Journal:  J Am Soc Nephrol       Date:  2015-01-02       Impact factor: 10.121

2.  An integrated pipeline for the multidimensional analysis of branching morphogenesis.

Authors:  Alexander N Combes; Kieran M Short; James Lefevre; Nicholas A Hamilton; Melissa H Little; Ian M Smyth
Journal:  Nat Protoc       Date:  2014-11-20       Impact factor: 13.491

3.  Claudin-7, -16, and -19 during mouse kidney development.

Authors:  Halim Khairallah; Jasmine El Andalousi; Annie Simard; Nicholas Haddad; Yan-Hua Chen; Jianghui Hou; Aimee K Ryan; Indra R Gupta
Journal:  Tissue Barriers       Date:  2014-08-08

4.  The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Authors:  Thomas A Darde; Olivier Sallou; Emmanuelle Becker; Bertrand Evrard; Cyril Monjeaud; Yvan Le Bras; Bernard Jégou; Olivier Collin; Antoine D Rolland; Frédéric Chalmel
Journal:  Nucleic Acids Res       Date:  2015-04-16       Impact factor: 16.971

5.  Dre - Cre sequential recombination provides new tools for retinal ganglion cell labeling and manipulation in mice.

Authors:  Szilard Sajgo; Miruna Georgiana Ghinia; Melody Shi; Pinghu Liu; Lijin Dong; Nadia Parmhans; Octavian Popescu; Tudor Constantin Badea
Journal:  PLoS One       Date:  2014-03-07       Impact factor: 3.240

6.  The mouse Gene Expression Database (GXD): 2017 update.

Authors:  Jacqueline H Finger; Constance M Smith; Terry F Hayamizu; Ingeborg J McCright; Jingxia Xu; Meiyee Law; David R Shaw; Richard M Baldarelli; Jon S Beal; Olin Blodgett; Jeff W Campbell; Lori E Corbani; Jill R Lewis; Kim L Forthofer; Pete J Frost; Sharon C Giannatto; Lucie N Hutchins; Dave B Miers; Howie Motenko; Kevin R Stone; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

7.  In developing mouse kidneys, orientation of loop of Henle growth is adaptive and guided by long-range cues from medullary collecting ducts.

Authors:  C-Hong Chang; Jamie A Davies
Journal:  J Anat       Date:  2019-05-17       Impact factor: 2.610

8.  Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design.

Authors:  Melissa D Clarkson
Journal:  BMC Dev Biol       Date:  2016-05-21       Impact factor: 1.978

  8 in total

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