Literature DB >> 22636001

Upregulation of plasmid genes during stationary phase in Synechocystis sp. strain PCC 6803, a cyanobacterium.

Bertram M Berla1, Himadri B Pakrasi.   

Abstract

We analyzed DNA microarrays to identify highly expressed genes during stationary-phase growth of Synechocystis sp. PCC 6803. Many identified genes are on endogenous plasmids, with copy numbers between 0.4 and 7 per chromosome. The promoters of such genes will be useful for synthetic biology applications with this phototrophic host.

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Year:  2012        PMID： 22636001      PMCID： PMC3416404          DOI： 10.1128/AEM.01174-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  24 in total

1.  Expression of genes in cyanobacteria: adaptation of endogenous plasmids as platforms for high-level gene expression in Synechococcus sp. PCC 7002.

Authors:  Yu Xu; Richard M Alvey; Patrick O Byrne; Joel E Graham; Gaozhong Shen; Donald A Bryant
Journal:  Methods Mol Biol       Date:  2011

2.  Classification and strength measurement of stationary-phase promoters by use of a newly developed promoter cloning vector.

Authors:  Tomohiro Shimada; Hideki Makinoshima; Yoshito Ogawa; Takeyoshi Miki; Michihisa Maeda; Akira Ishihama
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

3.  Quantitative real-time polymerase chain reaction for determination of plasmid copy number in bacteria.

Authors:  Chai Lian Lee; Dave Siak Wei Ow; Steve Kah Weng Oh
Journal:  J Microbiol Methods       Date:  2005-09-21       Impact factor: 2.363

4.  The complete DNA sequence and replication analysis of the plasmid pCB2.4 from the cyanobacterium Synechocystis PCC 6803.

Authors:  X Yang; B A McFadden
Journal:  Plasmid       Date:  1994-03       Impact factor: 3.466

5.  Progress toward a biomimetic leaf: 4,000 h of hydrogen production by coating-stabilized nongrowing photosynthetic Rhodopseudomonas palustris.

Authors:  Jimmy L Gosse; Brian J Engel; Jeremy C-H Hui; Caroline S Harwood; Michael C Flickinger
Journal:  Biotechnol Prog       Date:  2010 Jul-Aug

6.  Production of phloroglucinol by Escherichia coli using a stationary-phase promoter.

Authors:  Yujin Cao; Mo Xian
Journal:  Biotechnol Lett       Date:  2011-05-05       Impact factor: 2.461

7.  Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria.

Authors:  K L Jones; S W Kim; J D Keasling
Journal:  Metab Eng       Date:  2000-10       Impact factor: 9.783

8.  CyanoBase: the cyanobacteria genome database update 2010.

Authors:  Mitsuteru Nakao; Shinobu Okamoto; Mitsuyo Kohara; Tsunakazu Fujishiro; Takatomo Fujisawa; Shusei Sato; Satoshi Tabata; Takakazu Kaneko; Yasukazu Nakamura
Journal:  Nucleic Acids Res       Date:  2009-10-30       Impact factor: 16.971

9.  A conjugative plasmid vector for promoter analysis in several cyanobacteria of the genera Synechococcus and Synechocystis.

Authors:  P Marraccini; S Bulteau; C Cassier-Chauvat; P Mermet-Bouvier; F Chauvat
Journal:  Plant Mol Biol       Date:  1993-11       Impact factor: 4.076

10.  A putative sensor kinase, Hik31, is involved in the response of Synechocystis sp. strain PCC 6803 to the presence of glucose.

Authors:  Shira Kahlon; Karen Beeri; Hiroshi Ohkawa; Yukako Hihara; Omer Murik; Iwane Suzuki; Teruo Ogawa; Aaron Kaplan
Journal:  Microbiology (Reading)       Date:  2006-03       Impact factor: 2.777
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  11 in total

1.  A Novel Mechanism, Linked to Cell Density, Largely Controls Cell Division in Synechocystis.

Authors:  Alberto A Esteves-Ferreira; Masami Inaba; Toshihiro Obata; Antoine Fort; Gerard T A Fleming; Wagner L Araújo; Alisdair R Fernie; Ronan Sulpice
Journal:  Plant Physiol       Date:  2017-06-23       Impact factor: 8.340

2.  Fine-Tuning of Photoautotrophic Protein Production by Combining Promoters and Neutral Sites in the Cyanobacterium Synechocystis sp. Strain PCC 6803.

Authors:  Andrew H Ng; Bertram M Berla; Himadri B Pakrasi
Journal:  Appl Environ Microbiol       Date:  2015-07-24       Impact factor: 4.792

3.  Utilising the native plasmid, pCA2.4, from the cyanobacterium Synechocystis sp. strain PCC6803 as a cloning site for enhanced product production.

Authors:  Patricia Armshaw; Dawn Carey; Con Sheahan; J Tony Pembroke
Journal:  Biotechnol Biofuels       Date:  2015-12-01       Impact factor: 6.040

Review 4.  Synthetic biology of cyanobacteria: unique challenges and opportunities.

Authors:  Bertram M Berla; Rajib Saha; Cheryl M Immethun; Costas D Maranas; Tae Seok Moon; Himadri B Pakrasi
Journal:  Front Microbiol       Date:  2013-08-27       Impact factor: 5.640

5.  Metabolic engineering of the pentose phosphate pathway for enhanced limonene production in the cyanobacterium Synechocysti s sp. PCC 6803.

Authors:  Po-Cheng Lin; Rajib Saha; Fuzhong Zhang; Himadri B Pakrasi
Journal:  Sci Rep       Date:  2017-12-13       Impact factor: 4.379

6.  Comparison of alternative integration sites in the chromosome and the native plasmids of the cyanobacterium Synechocystis sp. PCC 6803 in respect to expression efficiency and copy number.

Authors:  Csaba Nagy; Kati Thiel; Edita Mulaku; Henna Mustila; Paula Tamagnini; Eva-Mari Aro; Catarina C Pacheco; Pauli Kallio
Journal:  Microb Cell Fact       Date:  2021-07-10       Impact factor: 5.328

7.  Intensive DNA Replication and Metabolism during the Lag Phase in Cyanobacteria.

Authors:  Satoru Watanabe; Ryudo Ohbayashi; Yu Kanesaki; Natsumi Saito; Taku Chibazakura; Tomoyoshi Soga; Hirofumi Yoshikawa
Journal:  PLoS One       Date:  2015-09-02       Impact factor: 3.240

8.  Improving a Synechocystis-based photoautotrophic chassis through systematic genome mapping and validation of neutral sites.

Authors:  Filipe Pinto; Catarina C Pacheco; Paulo Oliveira; Arnau Montagud; Andrew Landels; Narciso Couto; Phillip C Wright; Javier F Urchueguía; Paula Tamagnini
Journal:  DNA Res       Date:  2015-10-21       Impact factor: 4.458

9.  Exploring native genetic elements as plug-in tools for synthetic biology in the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Deng Liu; Himadri B Pakrasi
Journal:  Microb Cell Fact       Date:  2018-03-26       Impact factor: 5.328

10.  Construction of a Shuttle Vector Using an Endogenous Plasmid From the Cyanobacterium Synechocystis sp. PCC6803.

Authors:  Haojie Jin; Yan Wang; Adam Idoine; Devaki Bhaya
Journal:  Front Microbiol       Date:  2018-07-24       Impact factor: 5.640
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