Literature DB >> 22634704

Sediminibacterium ginsengisoli sp. nov., isolated from soil of a ginseng field, and emended descriptions of the genus Sediminibacterium and of Sediminibacterium salmoneum.

Yeon-Ju Kim1, Ngoc-Lan Nguyen1, Hang-Yeon Weon2, Deok-Chun Yang1.   

Abstract

A Gram-negative bacterium, designated DCY13(T), was isolated from soil of a ginseng field in South Korea. Comparative analysis of 16S rRNA gene sequences showed that strain DCY13(T) shared the highest sequence similarity (95.0 %) with Sediminibacterium salmoneum NBRC 103935(T) and 87.6-91.4 % sequence similarity with other members of the family Chitinophagaceae. Cells were non-spore-forming rods, catalase- and oxidase-positive, motile by gliding and facultatively anaerobic. The only respiratory quinone was menaquinone 7 (MK-7) and the major fatty acids were iso-C17 : 0 3-OH, iso-C15 : 0 and iso-C15 : 1 G. The G+C content of the genomic DNA was 47.5±1.0 mol%. In addition to phosphatidylethanolamine, the major polar lipids were two unidentified aminophospholipids, one unidentified aminolipid and three unidentified polar lipids. The major cell-wall sugars were ribose, xylose and galactose. It is proposed that strain DCY13(T) represents a novel species in the genus Sediminibacterium, for which the name Sediminibacterium ginsengisoli sp. nov. is proposed. The type strain is DCY13(T) ( = KCTC 12833(T)  = JCM 15794(T)  = DSM 22335(T)). Emended descriptions of the genus Sediminibacterium and of Sediminibacterium salmoneum are also proposed.

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Year:  2012        PMID: 22634704     DOI: 10.1099/ijs.0.038554-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  6 in total

1.  Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.

Authors:  Marina García-López; Jan P Meier-Kolthoff; Brian J Tindall; Sabine Gronow; Tanja Woyke; Nikos C Kyrpides; Richard L Hahnke; Markus Göker
Journal:  Front Microbiol       Date:  2019-09-23       Impact factor: 5.640

2.  The impact of rearing environment on the development of gut microbiota in tilapia larvae.

Authors:  Christos Giatsis; Detmer Sipkema; Hauke Smidt; Hans Heilig; Giulia Benvenuti; Johan Verreth; Marc Verdegem
Journal:  Sci Rep       Date:  2015-12-11       Impact factor: 4.379

3.  The Effect of an Adsorbent Matrix on Recovery of Microorganisms from Hydrocarbon-Contaminated Groundwater.

Authors:  Nicole M Taylor; Courtney R A Toth; Victoria Collins; Paolo Mussone; Lisa M Gieg
Journal:  Microorganisms       Date:  2021-01-01

4.  Spatial and Temporal Constraints on the Composition of Microbial Communities in Subsurface Boreholes of the Edgar Experimental Mine.

Authors:  Patrick H Thieringer; Alexander S Honeyman; John R Spear
Journal:  Microbiol Spectr       Date:  2021-11-10

5.  Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California.

Authors:  Arun Sethuraman; Rosalina Stancheva; Ciara Sanders; Lakme Caceres; David Castro; Hannah Hausknecht-Buss; Simone Henry; Haven Johansen; Antolette Kasler; Sandy Lastor; Isabelle Massaro; Immanuel Mekuria; Andrea Moron-Solano; Niki Read; Gretchen Vengerova; Andrew Zhang; Xiaoyu Zhang; Betsy Read
Journal:  G3 (Bethesda)       Date:  2022-07-06       Impact factor: 3.542

6.  Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.

Authors:  Geoff A Christensen; JiWon Moon; Allison M Veach; Jennifer J Mosher; Ann M Wymore; Joy D van Nostrand; Jizhong Zhou; Terry C Hazen; Adam P Arkin; Dwayne A Elias
Journal:  PLoS One       Date:  2018-03-20       Impact factor: 3.240

  6 in total

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