Literature DB >> 22634174

Structural disorder in proteins brings order to crystal growth in biomineralization.

Lajos Kalmar1, Daniel Homola, Gabor Varga, Peter Tompa.   

Abstract

Biomineralization, the generation of hard tissues of living organisms, is a process strictly regulated by hormones, enzymes and a range of regulatory proteins of which several resisted structural characterization thus far. Without actual generalizations, there have been scattered observations in the literature for the structural disorder of these proteins. To address this issue in general, we have collected SwissProt proteins involved in the formation of bone and teeth in vertebrates, annotated for biomineralization. All these proteins show an extremely high level of predicted disorder (with a mean of 53%), making them the most disordered functional class of the protein world. Exactly the same feature was established for evolutionarily more distant proteins involved in the formation of the silica wall of marine diatoms and the shell of oysters and other mollusks. Because these proteins also show an extremely biased amino acid composition, such as high negative charge, high frequency of Ser and Asp or Pro residues and repetitiveness, we also carried out a database search with these sequence features for further proteins. This search uncovered several further disordered proteins with clearly related functions, although their annotations made no mention of biomineralization. This general and very strong correlation between biomineralization, structural disorder of proteins and particular sequence features indicates that regulated growth of mineral phase in biology can only be achieved by the assistance of highly disordered proteins.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22634174     DOI: 10.1016/j.bone.2012.05.009

Source DB:  PubMed          Journal:  Bone        ISSN: 1873-2763            Impact factor:   4.398


  35 in total

1.  A dynamic history of gene duplications and losses characterizes the evolution of the SPARC family in eumetazoans.

Authors:  Stephanie Bertrand; Jaime Fuentealba; Antoine Aze; Clare Hudson; Hitoyoshi Yasuo; Marcela Torrejon; Hector Escriva; Sylvain Marcellini
Journal:  Proc Biol Sci       Date:  2013-02-27       Impact factor: 5.349

2.  Dynamic footprint of sequestration in the molecular fluctuations of osteopontin.

Authors:  S Lenton; T Seydel; T Nylander; C Holt; M Härtlein; S Teixeira; G Zaccai
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

3.  Secondary structure and dynamics study of the intrinsically disordered silica-mineralizing peptide P5 S3 during silicic acid condensation and silica decondensation.

Authors:  Christian Zerfaß; Garry W Buchko; Wendy J Shaw; Stephan Hobe; Harald Paulsen
Journal:  Proteins       Date:  2017-08-24

4.  SM50 repeat-polypeptides self-assemble into discrete matrix subunits and promote appositional calcium carbonate crystal growth during sea urchin tooth biomineralization.

Authors:  Yelin Mao; Paul G Satchell; Xianghong Luan; Thomas G H Diekwisch
Journal:  Ann Anat       Date:  2015-07-06       Impact factor: 2.698

5.  Energy dissipation of osteopontin at a HAp mineral interface: Implications for bone biomechanics.

Authors:  Mahdi Tavakol; Ted J Vaughan
Journal:  Biophys J       Date:  2021-12-18       Impact factor: 4.033

6.  Harnessing biomolecules for bioinspired dental biomaterials.

Authors:  Nicholas G Fischer; Eliseu A Münchow; Candan Tamerler; Marco C Bottino; Conrado Aparicio
Journal:  J Mater Chem B       Date:  2020-08-04       Impact factor: 6.331

Review 7.  Intrinsically disordered proteins and biomineralization.

Authors:  Adele L Boskey; Eduardo Villarreal-Ramirez
Journal:  Matrix Biol       Date:  2016-01-22       Impact factor: 11.583

8.  Intrinsically disordered enamel matrix protein ameloblastin forms ribbon-like supramolecular structures via an N-terminal segment encoded by exon 5.

Authors:  Tomas Wald; Adriana Osickova; Miroslav Sulc; Oldrich Benada; Alena Semeradtova; Lenka Rezabkova; Vaclav Veverka; Lucie Bednarova; Jan Maly; Pavel Macek; Peter Sebo; Ivan Slaby; Jiri Vondrasek; Radim Osicka
Journal:  J Biol Chem       Date:  2013-06-19       Impact factor: 5.157

9.  A quantitative calcium phosphate nanocluster model of the casein micelle: the average size, size distribution and surface properties.

Authors:  Carl Holt
Journal:  Eur Biophys J       Date:  2021-04-18       Impact factor: 1.733

Review 10.  Classification of intrinsically disordered regions and proteins.

Authors:  Robin van der Lee; Marija Buljan; Benjamin Lang; Robert J Weatheritt; Gary W Daughdrill; A Keith Dunker; Monika Fuxreiter; Julian Gough; Joerg Gsponer; David T Jones; Philip M Kim; Richard W Kriwacki; Christopher J Oldfield; Rohit V Pappu; Peter Tompa; Vladimir N Uversky; Peter E Wright; M Madan Babu
Journal:  Chem Rev       Date:  2014-04-29       Impact factor: 60.622

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