Literature DB >> 22629570

Methods and applications for assembling large DNA constructs.

Chuck Merryman1, Daniel G Gibson.   

Abstract

The construction of large DNA molecules that encode pathways, biological machinery, and entire genomes has been limited to the reproduction of natural sequences. However, now that robust methods for assembling hundreds of DNA fragments into constructs > 20 kb are readily available, optimization of large genetic elements for metabolic engineering purposes is becoming more routine. Here, various DNA assembly methodologies are reviewed and some of their potential applications are discussed. We tested the potential of DNA assembly to install rational changes in complex biosynthetic pathways, their potential for generating complex libraries, and consider how various strategies are applicable to metabolic engineering.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22629570     DOI: 10.1016/j.ymben.2012.02.005

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  17 in total

Review 1.  DNA assembly techniques for next-generation combinatorial biosynthesis of natural products.

Authors:  Ryan E Cobb; Jonathan C Ning; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

2.  Construction of an agroinfectious clone of bean rugose mosaic virus using Gibson Assembly.

Authors:  Taise Bijora; Rosana Blawid; Danielle K T Costa; Francisco J L Aragão; Eliezer R Souto; Tatsuya Nagata
Journal:  Virus Genes       Date:  2017-03-18       Impact factor: 2.332

3.  Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complex.

Authors:  Gina L Lipscomb; Gerrit J Schut; Michael P Thorgersen; William J Nixon; Robert M Kelly; Michael W W Adams
Journal:  J Biol Chem       Date:  2013-12-07       Impact factor: 5.157

4.  Assembly of long DNA sequences using a new synthetic Escherichia coli-yeast shuttle vector.

Authors:  Zheng Hou; Zheng Zhou; Zonglin Wang; Gengfu Xiao
Journal:  Virol Sin       Date:  2016-04-11       Impact factor: 4.327

5.  Flagellar region 3b supports strong expression of integrated DNA and the highest chromosomal integration efficiency of the Escherichia coli flagellar regions.

Authors:  Mario Juhas; James W Ajioka
Journal:  Microb Biotechnol       Date:  2015-07       Impact factor: 5.813

6.  Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels.

Authors:  Sang Woo Seo; Jae-Seong Yang; Han-Saem Cho; Jina Yang; Seong Cheol Kim; Jong Moon Park; Sanguk Kim; Gyoo Yeol Jung
Journal:  Sci Rep       Date:  2014-03-31       Impact factor: 4.379

7.  Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly.

Authors:  Joseph P Torella; Christian R Boehm; Florian Lienert; Jan-Hung Chen; Jeffrey C Way; Pamela A Silver
Journal:  Nucleic Acids Res       Date:  2013-09-26       Impact factor: 16.971

8.  Escherichia coli flagellar genes as target sites for integration and expression of genetic circuits.

Authors:  Mario Juhas; Lewis D B Evans; Joe Frost; Peter W Davenport; Orr Yarkoni; Gillian M Fraser; James W Ajioka
Journal:  PLoS One       Date:  2014-10-28       Impact factor: 3.240

9.  Coordinated induction of multi-gene pathways in Saccharomyces cerevisiae.

Authors:  Jing Liang; Jonathan C Ning; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2012-12-22       Impact factor: 16.971

10.  Combinatorial engineering of 1-deoxy-D-xylulose 5-phosphate pathway using cross-lapping in vitro assembly (CLIVA) method.

Authors:  Ruiyang Zou; Kang Zhou; Gregory Stephanopoulos; Heng Phon Too
Journal:  PLoS One       Date:  2013-11-05       Impact factor: 3.240

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