Literature DB >> 22628513

Genome sequence of Diplorickettsia massiliensis, an emerging Ixodes ricinus-associated human pathogen.

Mano J Mathew1, Geetha Subramanian, Thi-Tien Nguyen, Catherine Robert, Oleg Mediannikov, Pierre-Edouard Fournier, Didier Raoult.   

Abstract

Diplorickettsia massiliensis is a gammaproteobacterium in the order Legionellales and an agent of tick-borne infection. We sequenced the genome from strain 20B, isolated from an Ixodes ricinus tick. The genome consists of a 1,727,973-bp chromosome but no plasmid and includes 2,269 protein-coding genes and 42 RNA genes, including 3 rRNA genes.

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Year:  2012        PMID： 22628513      PMCID： PMC3370879          DOI： 10.1128/JB.00448-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  SignalP 4.0: discriminating signal peptides from transmembrane regions.

Authors:  Thomas Nordahl Petersen; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Methods       Date:  2011-09-29       Impact factor: 28.547

2.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

Review 4.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 6.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

7.  Diplorickettsia massiliensis as a human pathogen.

Authors:  G Subramanian; O Mediannikov; E Angelakis; C Socolovschi; G Kaplanski; L Martzolff; D Raoult
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2011-07-22       Impact factor: 3.267

8.  A novel obligate intracellular gamma-proteobacterium associated with ixodid ticks, Diplorickettsia massiliensis, Gen. Nov., Sp. Nov.

Authors:  Oleg Mediannikov; Zuzana Sekeyová; Marie-Laure Birg; Didier Raoult
Journal:  PLoS One       Date:  2010-07-13       Impact factor: 3.240

9.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  6 in total

1.  A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades.

Authors:  Navneet Saini; Radhey S Gupta
Journal:  Antonie Van Leeuwenhoek       Date:  2021-04-21       Impact factor: 2.271

2.  Insights into endophytic bacterial diversity of rice grown across the different agro-ecological regions of West Bengal, India.

Authors:  Pranamita Kunda; Abhishek Mukherjee; Paltu Kumar Dhal
Journal:  World J Microbiol Biotechnol       Date:  2021-09-28       Impact factor: 3.312

3.  Candidate pathogenicity islands in the genome of 'Candidatus Rickettsiella isopodorum', an intracellular bacterium infecting terrestrial isopod crustaceans.

Authors:  YaDong Wang; Christopher Chandler
Journal:  PeerJ       Date:  2016-12-21       Impact factor: 2.984

4.  The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant.

Authors:  Tiscar Graells; Helena Ishak; Madeleine Larsson; Lionel Guy
Journal:  FEMS Microbiol Ecol       Date:  2018-12-01       Impact factor: 4.194

5.  The Legionella genus core effectors display functional conservation among orthologs by themselves or combined with an accessory protein.

Authors:  Michael Wexler; Tal Zusman; Marika Linsky; Ziv Lifshitz; Gil Segal
Journal:  Curr Res Microb Sci       Date:  2022-01-08

6.  The Evaluation of Bacterial Abundance and Functional Potentials in the Three Major Watersheds, Located in the Hot Spring Zone of the Tatun Volcano Group Basin, Taiwan.

Authors:  Viji Nagarajan; Hsin-Chi Tsai; Jung-Sheng Chen; Bashir Hussain; Cheng-Wei Fan; Aslia Asif; Bing-Mu Hsu
Journal:  Microorganisms       Date:  2022-02-23
  6 in total

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