Literature DB >> 22628512

Genome sequence of the nitroaromatic compound-degrading Bacterium Burkholderia sp. strain SJ98.

Shailesh Kumar1, Surendra Vikram, Gajendra Pal Singh Raghava.   

Abstract

We report the 7.85-Mb genome sequence of Burkholderia sp. strain SJ98, isolated from agricultural fields of Assam, India. The draft genome of this strain will be helpful in studying the genetic pathways involved in the degradation of aromatic compounds.

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Year:  2012        PMID： 22628512      PMCID： PMC3370847          DOI： 10.1128/JB.00497-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  Reductive dehalogenation mediated initiation of aerobic degradation of 2-chloro-4-nitrophenol (2C4NP) by Burkholderia sp. strain SJ98.

Authors:  Janmejay Pandey; Hermann J Heipieper; Archana Chauhan; Pankaj Kumar Arora; Dhan Prakash; M Takeo; Rakesh K Jain
Journal:  Appl Microbiol Biotechnol       Date:  2011-05-28       Impact factor: 4.813

2.  Chemotaxis and biodegradation of 3-methyl- 4-nitrophenol by Ralstonia sp. SJ98.

Authors:  B Bhushan; S K Samanta; A Chauhan; A K Chakraborti; R K Jain
Journal:  Biochem Biophys Res Commun       Date:  2000-08-18       Impact factor: 3.575

3.  Chemotaxis of a Ralstonia sp. SJ98 toward different nitroaromatic compounds and their degradation.

Authors:  S K Samanta; B Bhushan; A Chauhan; R K Jain
Journal:  Biochem Biophys Res Commun       Date:  2000-03-05       Impact factor: 3.575

4.  Chemotaxis of a Ralstonia sp. SJ98 toward co-metabolizable nitroaromatic compounds.

Authors:  Gunjan Pandey; Ashvini Chauhan; Sudip K Samanta; Rakesh K Jain
Journal:  Biochem Biophys Res Commun       Date:  2002-12-06       Impact factor: 3.575

5.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

6.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  6 in total
  10 in total

1.  Transcriptional activation of multiple operons involved in para-nitrophenol degradation by Pseudomonas sp. Strain WBC-3.

Authors:  Wen-Mao Zhang; Jun-Jie Zhang; Xuan Jiang; Hongjun Chao; Ning-Yi Zhou
Journal:  Appl Environ Microbiol       Date:  2014-10-17       Impact factor: 4.792

Review 2.  Prospecting the significance of methane-utilizing bacteria in agriculture.

Authors:  Vijaya Rani; Radha Prasanna; Rajeev Kaushik
Journal:  World J Microbiol Biotechnol       Date:  2022-08-04       Impact factor: 4.253

3.  Methane utilizing plant growth-promoting microbial diversity analysis of flooded paddy ecosystem of India.

Authors:  Vijaya Rani; Arti Bhatia; Lata Nain; Govind Singh Tomar; Rajeev Kaushik
Journal:  World J Microbiol Biotechnol       Date:  2021-02-23       Impact factor: 3.312

4.  The gene cluster for para-nitrophenol catabolism is responsible for 2-chloro-4-nitrophenol degradation in Burkholderia sp. strain SJ98.

Authors:  Jun Min; Jun-Jie Zhang; Ning-Yi Zhou
Journal:  Appl Environ Microbiol       Date:  2014-08-01       Impact factor: 4.792

5.  Physiological Role of the Previously Unexplained Benzenetriol Dioxygenase Homolog in the Burkholderia sp. Strain SJ98 4-Nitrophenol Catabolism Pathway.

Authors:  Juan Liu; Ying Xu; Shi-Kai Deng; Lei Liu; Jun Min; Ting Shi; Jim C Spain; Ning-Yi Zhou
Journal:  Appl Environ Microbiol       Date:  2021-06-25       Impact factor: 4.792

6.  Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.

Authors:  Amandeep Sawana; Mobolaji Adeolu; Radhey S Gupta
Journal:  Front Genet       Date:  2014-12-19       Impact factor: 4.599

7.  Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.

Authors:  Charlotte Peeters; Jan P Meier-Kolthoff; Bart Verheyde; Evie De Brandt; Vaughn S Cooper; Peter Vandamme
Journal:  Front Microbiol       Date:  2016-06-08       Impact factor: 5.640

8.  Genome annotation of Burkholderia sp. SJ98 with special focus on chemotaxis genes.

Authors:  Shailesh Kumar; Surendra Vikram; Gajendra Pal Singh Raghava
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

Review 9.  Integration of bioinformatics to biodegradation.

Authors:  Pankaj Kumar Arora; Hanhong Bae
Journal:  Biol Proced Online       Date:  2014-04-27       Impact factor: 3.244

10.  Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system.

Authors:  I-Min A Chen; Victor M Markowitz; Krishna Palaniappan; Ernest Szeto; Ken Chu; Jinghua Huang; Anna Ratner; Manoj Pillay; Michalis Hadjithomas; Marcel Huntemann; Natalia Mikhailova; Galina Ovchinnikova; Natalia N Ivanova; Nikos C Kyrpides
Journal:  BMC Genomics       Date:  2016-04-26       Impact factor: 3.969
  10 in total

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