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Literature DB >> 22628503

Complete genome sequence of Riemerella anatipestifer reference strain.

Xiaojia Wang¹, DeKang Zhu, MingShu Wang, AnChun Cheng, RenYong Jia, Yi Zhou, Zhengli Chen, QiHui Luo, Fei Liu, Yin Wang, Xiao Yue Chen.

Abstract

Riemerella anatipestifer is an infectious pathogen causing serositis in ducks. We had the genome of the R. anatipestifer reference strain ATCC 11845 sequenced. The completed draft genome consists of one circular chromosome with 2,164,087 bp. There are 2,101 genes in the draft, and its GC content is 35.01%.

Entities: Disease Species

Mesh：

Substances：
DNA, Bacterial

Year: 2012 PMID： 22628503 PMCID： PMC3370850 DOI： 10.1128/JB.00366-12

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

16 in total

1. Exclusion of strain 670/89 as type strain for serovar 20 of Riemerella anatipestifer.

Authors: M Ryll; K H Hinz
Journal: Berl Munch Tierarztl Wochenschr Date: 2000-02 Impact factor: 0.328

Review 2. Targeting the assembly of bacterial cell division protein FtsZ with small molecules.

Authors: Claudia Schaffner-Barbero; Mar Martín-Fontecha; Pablo Chacón; José M Andreu
Journal: ACS Chem Biol Date: 2011-11-15 Impact factor: 5.100

3. Co-evolution of metabolism and protein sequences.

Authors: Moritz Schütte; Niels Klitgord; Daniel Segrè; Oliver Ebenhöh
Journal: Genome Inform Date: 2010-01

4. Tandem repeats finder: a program to analyze DNA sequences.

Authors: G Benson
Journal: Nucleic Acids Res Date: 1999-01-15 Impact factor: 16.971

5. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors: T M Lowe; S R Eddy
Journal: Nucleic Acids Res Date: 1997-03-01 Impact factor: 16.971

6. Generation and analysis of expressed sequence tags from adductor muscle of Japanese scallop Mizuhopecten yessoensis.

Authors: Xiangying Meng; Yaqing Chang; Xuemei Qiu; Xiuli Wang
Journal: Comp Biochem Physiol Part D Genomics Proteomics Date: 2010-08-19 Impact factor: 2.674

7. Antimicrobial susceptibility of Riemerella anatipestifer isolated from ducks and the efficacy of ceftiofur treatment.

Authors: Chao-Fu Chang; Wen-Hwa Lin; Tung-Mao Yeh; Tai-Sheng Chiang; Yung-Fu Chang
Journal: J Vet Diagn Invest Date: 2003-01 Impact factor: 1.279

8. Two distinct major facilitator superfamily drug efflux pumps mediate chloramphenicol resistance in Streptomyces coelicolor.

Authors: James J Vecchione; Blair Alexander; Jason K Sello
Journal: Antimicrob Agents Chemother Date: 2009-08-17 Impact factor: 5.191

9. Riemerella anatipestifer gen. nov., comb. nov., the causative agent of septicemia anserum exsudativa, and its phylogenetic affiliation within the Flavobacterium-Cytophaga rRNA homology group.

Authors: P Segers; W Mannheim; M Vancanneyt; K De Brandt; K H Hinz; K Kersters; P Vandamme
Journal: Int J Syst Bacteriol Date: 1993-10

10. Analysis of the complement and molecular evolution of tRNA genes in cow.

Authors: Dave T P Tang; Evgeny A Glazov; Sean M McWilliam; Wesley C Barris; Brian P Dalrymple
Journal: BMC Genomics Date: 2009-04-24 Impact factor: 3.969

17 in total

1. Use of Natural Transformation To Establish an Easy Knockout Method in Riemerella anatipestifer.

Authors: MaFeng Liu; Li Zhang; Li Huang; Francis Biville; DeKang Zhu; MingShu Wang; RenYong Jia; Shun Chen; KunFeng Sun; Qiao Yang; Ying Wu; XiaoYue Chen; AnChun Cheng
Journal: Appl Environ Microbiol Date: 2017-04-17 Impact factor: 4.792

2. Identification, serotyping, and antimicrobial susceptibility of Riemerella anatipestifer isolated from ducks in Vietnam.

Authors: Thanh-Thin Vo; Van-Tuan Dang; Dinh-Hai Le; Trong-Hai Nguyen
Journal: Open Vet J Date: 2022-06-17

3. Pan-genome analysis of Riemerella anatipestifer reveals its genomic diversity and acquired antibiotic resistance associated with genomic islands.

Authors: Dekang Zhu; Zhishuang Yang; Jinge Xu; Mingshu Wang; Renyong Jia; Shun Chen; Mafeng Liu; Xinxin Zhao; Qiao Yang; Ying Wu; Shaqiu Zhang; Yunya Liu; Ling Zhang; Yanling Yu; Xiaoyue Chen; Anchun Cheng
Journal: Funct Integr Genomics Date: 2019-10-25 Impact factor: 3.410

Complete genome sequence of Riemerella anatipestifer reference strain.

1. Exclusion of strain 670/89 as type strain for serovar 20 of Riemerella anatipestifer.

Review 2. Targeting the assembly of bacterial cell division protein FtsZ with small molecules.

3. Co-evolution of metabolism and protein sequences.

4. Tandem repeats finder: a program to analyze DNA sequences.

5. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

6. Generation and analysis of expressed sequence tags from adductor muscle of Japanese scallop Mizuhopecten yessoensis.

7. Antimicrobial susceptibility of Riemerella anatipestifer isolated from ducks and the efficacy of ceftiofur treatment.

8. Two distinct major facilitator superfamily drug efflux pumps mediate chloramphenicol resistance in Streptomyces coelicolor.

9. Riemerella anatipestifer gen. nov., comb. nov., the causative agent of septicemia anserum exsudativa, and its phylogenetic affiliation within the Flavobacterium-Cytophaga rRNA homology group.

10. Analysis of the complement and molecular evolution of tRNA genes in cow.

1. Use of Natural Transformation To Establish an Easy Knockout Method in Riemerella anatipestifer.

2. Identification, serotyping, and antimicrobial susceptibility of Riemerella anatipestifer isolated from ducks in Vietnam.

3. Pan-genome analysis of Riemerella anatipestifer reveals its genomic diversity and acquired antibiotic resistance associated with genomic islands.

4. Genome Sequence of Riemerella anatipestifer Strain RCAD0122, a Multidrug-Resistant Isolate from Ducks.

5. Evaluation of a quantitative real-time PCR for rapid detection of Riemerella Anatipestifer infection in birds.

6. Riemerella anatipestifer M949_0459 gene is responsible for the bacterial resistance to tigecycline.

7. Genome Sequence of Avirulent Riemerella anatipestifer Strain RA-SG.

8. Evolution in action: dissemination of tet(X) into pathogenic microbiota.

9. Comparative genomics of Riemerella anatipestifer reveals genetic diversity.

10. Genome-Wide Analysis of the Synonymous Codon Usage Patterns in Riemerella anatipestifer.