Literature DB >> 22628496

Draft genome sequence of Rubrivivax gelatinosus CBS.

Pingsha Hu1, Juan Lang, Karen Wawrousek, Jianping Yu, Pin-Ching Maness, Jin Chen.   

Abstract

Rubrivivax gelatinosus CBS, a purple nonsulfur photosynthetic bacterium, can grow photosynthetically using CO and N(2) as the sole carbon and nitrogen nutrients, respectively. R. gelatinosus CBS is of particular interest due to its ability to metabolize CO and yield H(2). We present the 5-Mb draft genome sequence of R. gelatinosus CBS with the goal of providing genetic insight into the metabolic properties of this bacterium.

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Year:  2012        PMID： 22628496      PMCID： PMC3370876          DOI： 10.1128/JB.00515-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Energy generation from the CO oxidation-hydrogen production pathway in Rubrivivax gelatinosus.

Authors:  Pin-Ching Maness; Jie Huang; Sharon Smolinski; Vekalet Tek; Gary Vanzin
Journal:  Appl Environ Microbiol       Date:  2005-06       Impact factor: 4.792

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Characterization of the oxygen tolerance of a hydrogenase linked to a carbon monoxide oxidation pathway in Rubrivivax gelatinosus.

Authors:  Pin-Ching Maness; Sharon Smolinski; Anne C Dillon; Michael J Heben; Paul F Weaver
Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

5.  Characterization of genes responsible for the CO-linked hydrogen production pathway in Rubrivivax gelatinosus.

Authors:  Gary Vanzin; Jianping Yu; Sharon Smolinski; Vekalet Tek; Grant Pennington; Pin-Ching Maness
Journal:  Appl Environ Microbiol       Date:  2010-04-16       Impact factor: 4.792

6.  The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.

Authors:  Kevin Galens; Joshua Orvis; Sean Daugherty; Heather H Creasy; Sam Angiuoli; Owen White; Jennifer Wortman; Anup Mahurkar; Michelle Gwinn Giglio
Journal:  Stand Genomic Sci       Date:  2011-04-25

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  7 in total
  2 in total

1.  Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus.

Authors:  Karen Wawrousek; Scott Noble; Jonas Korlach; Jin Chen; Carrie Eckert; Jianping Yu; Pin-Ching Maness
Journal:  PLoS One       Date:  2014-12-05       Impact factor: 3.240

2.  Comparative Genome Analysis of the Photosynthetic Betaproteobacteria of the Genus Rhodocyclus: Heterogeneity within Strains Assigned to Rhodocyclus tenuis and Description of Rhodocyclus gracilis sp. nov. as a New Species.

Authors:  John A Kyndt; Fabiola A Aviles; Johannes F Imhoff; Sven Künzel; Sven C Neulinger; Terrance E Meyer
Journal:  Microorganisms       Date:  2022-03-18
  2 in total

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