Literature DB >> 22623878

Parameterized Specification, Configuration and Execution of Data-Intensive Scientific Workflows.

Vijay S Kumar1, Tahsin Kurc, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoonju Lee Nelson, P Sadayappan, Ewa Deelman, Yolanda Gil, Mary Hall, Joel Saltz.   

Abstract

Data analysis processes in scientific applications can be expressed as coarse-grain workflows of complex data processing operations with data flow dependencies between them. Performance optimization of these workflows can be viewed as a search for a set of optimal values in a multidimensional parameter space consisting of input performance parameters to the applications that are known to affect their execution times. While some performance parameters such as grouping of workflow components and their mapping to machines do not affect the accuracy of the analysis, others may dictate trading the output quality of individual components (and of the whole workflow) for performance. This paper describes an integrated framework which is capable of supporting performance optimizations along multiple such parameters. Using two real-world applications in the spatial, multidimensional data analysis domain, we present an experimental evaluation of the proposed framework.

Entities:  

Year:  2010        PMID: 22623878      PMCID: PMC3356923          DOI: 10.1007/s10586-010-0133-8

Source DB:  PubMed          Journal:  Cluster Comput        ISSN: 1386-7857            Impact factor:   1.809


  3 in total

1.  Taverna: a tool for the composition and enactment of bioinformatics workflows.

Authors:  Tom Oinn; Matthew Addis; Justin Ferris; Darren Marvin; Martin Senger; Mark Greenwood; Tim Carver; Kevin Glover; Matthew R Pocock; Anil Wipat; Peter Li
Journal:  Bioinformatics       Date:  2004-06-16       Impact factor: 6.937

2.  Automated microscopy system for mosaic acquisition and processing.

Authors:  S K Chow; H Hakozaki; D L Price; N A B MacLean; T J Deerinck; J C Bouwer; M E Martone; S T Peltier; M H Ellisman
Journal:  J Microsc       Date:  2006-05       Impact factor: 1.758

3.  Large-scale biomedical image analysis in grid environments.

Authors:  Vijay S Kumar; Benjamin Rutt; Tahsin Kurc; Umit V Catalyurek; Tony C Pan; Sunny Chow; Stephan Lamont; Maryann Martone; Joel H Saltz
Journal:  IEEE Trans Inf Technol Biomed       Date:  2008-03
  3 in total

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