Literature DB >> 22616940

Photochemical generation and reactivity of the major hydroxyl radical adduct of thymidine.

Joanna Maria N San Pedro1, Marc M Greenberg.   

Abstract

5,6-Dihydro-5-hydroxythymidin-6-yl radical (1), the major reactive intermediate resulting from hydroxyl radical addition to C5 of the pyrimidine, is produced via 350 nm photolysis of a 2,5-dimethoxyphenylsulfide precursor (2). Competition between O(2) and thiol for 1 suggests that the radical reacts relatively slowly with β-mercaptoethanol compared to other alkyl radicals. Overall, aryl sulfide 2 should be an effective precursor for the major hydroxyl radical adduct of thymidine in DNA.

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Year:  2012        PMID: 22616940      PMCID: PMC3366351          DOI: 10.1021/ol301109z

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  12 in total

1.  Tandem lesions are the major products resulting from a pyrimidine nucleobase radical.

Authors:  K Nolan Carter; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2003-11-05       Impact factor: 15.419

2.  Displacement reactions of a 1,2-anhydro-alpha-D-hexopyranose: installation of useful functionality at the anomeric carbon.

Authors:  D M Gordon; S J Danishefsky
Journal:  Carbohydr Res       Date:  1990-10-10       Impact factor: 2.104

3.  Substituent Effects on the Photocleavage of Benzyl-Sulfur Bonds. Observation of the "Meta Effect"

Authors:  Steven A. Fleming; Anton W. Jensen
Journal:  J Org Chem       Date:  1996-10-04       Impact factor: 4.354

4.  Direct strand scission in double stranded RNA via a C5-pyrimidine radical.

Authors:  Marino J E Resendiz; Venkata Pottiboyina; Michael D Sevilla; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2012-02-15       Impact factor: 15.419

5.  The reactivity of the 5-hydroxy-5,6-dihydrothymidin-6-yl radical in oligodeoxyribonucleotides.

Authors:  Qibin Zhang; Yinsheng Wang
Journal:  Chem Res Toxicol       Date:  2005-12       Impact factor: 3.739

6.  Characterization and mechanism of formation of tandem lesions in DNA by a nucleobase peroxyl radical.

Authors:  In Seok Hong; K Nolan Carter; Kousuke Sato; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2007-03-03       Impact factor: 15.419

Review 7.  Elucidating DNA damage and repair processes by independently generating reactive and metastable intermediates.

Authors:  Marc M Greenberg
Journal:  Org Biomol Chem       Date:  2006-11-14       Impact factor: 3.876

8.  Product and mechanistic analysis of the reactivity of a C6-pyrimidine radical in RNA.

Authors:  Aaron C Jacobs; Marino J E Resendiz; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2011-03-10       Impact factor: 15.419

9.  DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone.

Authors:  B Balasubramanian; W K Pogozelski; T D Tullius
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-18       Impact factor: 11.205

10.  Photochemical generation and reactivity of the 5,6-dihydrouridin-6-yl radical.

Authors:  Cory A Newman; Marino J E Resendiz; Jonathan T Sczepanski; Marc M Greenberg
Journal:  J Org Chem       Date:  2009-09-18       Impact factor: 4.354

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  9 in total

1.  Pyrimidine Nucleobase Radical Reactivity in DNA and RNA.

Authors:  Marc M Greenberg
Journal:  Radiat Phys Chem Oxf Engl 1993       Date:  2016-06-07       Impact factor: 2.858

2.  Reactivity of Nucleic Acid Radicals.

Authors:  Marc M Greenberg
Journal:  Adv Phys Org Chem       Date:  2016       Impact factor: 2.833

3.  Photochemical control of RNA structure by disrupting π-stacking.

Authors:  Marino J E Resendiz; Arne Schön; Ernesto Freire; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2012-07-24       Impact factor: 15.419

4.  Deconvoluting the reactivity of two intermediates formed from modified pyrimidines.

Authors:  Liwei Weng; Sonia M Horvat; Carl H Schiesser; Marc M Greenberg
Journal:  Org Lett       Date:  2013-07-03       Impact factor: 6.005

5.  Oxidation and reduction of the 5-(2'-deoxyuridinyl)methyl radical.

Authors:  Gengjie Lin; Lei Li
Journal:  Angew Chem Int Ed Engl       Date:  2013-04-15       Impact factor: 15.336

6.  Independent Generation and Reactivity of Thymidine Radical Cations.

Authors:  Huabing Sun; Marisa L Taverna Porro; Marc M Greenberg
Journal:  J Org Chem       Date:  2017-10-10       Impact factor: 4.354

7.  Photochemical control of DNA structure through radical disproportionation.

Authors:  Joanna Maria N San Pedro; Marc M Greenberg
Journal:  Chembiochem       Date:  2013-08-12       Impact factor: 3.164

8.  Independent generation and reactivity of uridin-2'-yl radical.

Authors:  Rakesh Paul; Marc M Greenberg
Journal:  J Org Chem       Date:  2014-10-17       Impact factor: 4.354

9.  5,6-Dihydropyrimidine peroxyl radical reactivity in DNA.

Authors:  Joanna Maria N San Pedro; Marc M Greenberg
Journal:  J Am Chem Soc       Date:  2014-02-28       Impact factor: 15.419

  9 in total

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