Literature DB >> 22615474

Spatial and temporal organization of multi-protein assemblies: achieving sensitive control in information-rich cell-regulatory systems.

Victor M Bolanos-Garcia1, Qian Wu, Takashi Ochi, Dimitri Y Chirgadze, Bancinyane Lynn Sibanda, Tom L Blundell.   

Abstract

The regulation of cellular processes in living organisms requires signalling systems that have a high signal-to-noise ratio. This is usually achieved by transient, multi-protein complexes that assemble cooperatively. Even in the crowded environment of the cell, such assemblies are unlikely to form by chance, thereby providing a sensitive regulation of cellular processes. Furthermore, selectivity and sensitivity may be achieved by the requirement for concerted folding and binding of previously unfolded components. We illustrate these features by focusing on two essential signalling pathways of eukaryotic cells: first, the monitoring and repair of DNA damage by non-homologous end joining, and second, the mitotic spindle assembly checkpoint, which detects and corrects defective attachments of chromosomes to the kinetochore. We show that multi-protein assemblies moderate the full range of functional complexity and diversity in the two signalling systems. Deciphering the nature of the interactions is central to understanding the mechanisms that control the flow of information in cell signalling and regulation.

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Year:  2012        PMID: 22615474     DOI: 10.1098/rsta.2011.0268

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  16 in total

1.  Beyond crystals: the dialectic of materials and information.

Authors:  Julyan H E Cartwright; Alan L Mackay
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2012-06-28       Impact factor: 4.226

2.  DNA-PKcs, Allostery, and DNA Double-Strand Break Repair: Defining the Structure and Setting the Stage.

Authors:  Dimitri Y Chirgadze; David B Ascher; Tom L Blundell; Bancinyane L Sibanda
Journal:  Methods Enzymol       Date:  2017-05-03       Impact factor: 1.600

3.  Structural and mechanistic insight into Holliday-junction dissolution by topoisomerase IIIα and RMI1.

Authors:  Nicolas Bocquet; Anna H Bizard; Wassim Abdulrahman; Nicolai B Larsen; Mahamadou Faty; Simone Cavadini; Richard D Bunker; Stephen C Kowalczykowski; Petr Cejka; Ian D Hickson; Nicolas H Thomä
Journal:  Nat Struct Mol Biol       Date:  2014-02-09       Impact factor: 15.369

Review 4.  Dynamic multiprotein assemblies shape the spatial structure of cell signaling.

Authors:  Ruth Nussinov; Hyunbum Jang
Journal:  Prog Biophys Mol Biol       Date:  2014-07-18       Impact factor: 3.667

5.  On the Regulation of Mitosis by the Kinetochore, a Macromolecular Complex and Organising Hub of Eukaryotic Organisms.

Authors:  Victor M Bolanos-Garcia
Journal:  Subcell Biochem       Date:  2022

6.  ProtCHOIR: a tool for proteome-scale generation of homo-oligomers.

Authors:  Pedro H M Torres; Artur D Rossi; Tom L Blundell
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 11.622

7.  Structure of a Blinkin-BUBR1 complex reveals an interaction crucial for kinetochore-mitotic checkpoint regulation via an unanticipated binding Site.

Authors:  Victor M Bolanos-Garcia; Tiziana Lischetti; Dijana Matak-Vinković; Ernesto Cota; Pete J Simpson; Dimitri Y Chirgadze; David R Spring; Carol V Robinson; Jakob Nilsson; Tom L Blundell
Journal:  Structure       Date:  2011-10-13       Impact factor: 5.006

8.  Snf2 family gene distribution in higher plant genomes reveals DRD1 expansion and diversification in the tomato genome.

Authors:  Joachim W Bargsten; Adam Folta; Ludmila Mlynárová; Jan-Peter Nap
Journal:  PLoS One       Date:  2013-11-28       Impact factor: 3.240

Review 9.  Direct and Propagated Effects of Small Molecules on Protein-Protein Interaction Networks.

Authors:  Laura C Cesa; Anna K Mapp; Jason E Gestwicki
Journal:  Front Bioeng Biotechnol       Date:  2015-08-24

10.  Fractal-like kinetics of intracellular enzymatic reactions: a chemical framework of endotoxin tolerance and a possible non-specific contribution of macromolecular crowding to cross-tolerance.

Authors:  Catalin Vasilescu; Mircea Olteanu; Paul Flondor; George A Calin
Journal:  Theor Biol Med Model       Date:  2013-09-14       Impact factor: 2.432

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