Literature DB >> 22611057

Molecular interaction databases.

Sandra Orchard1.   

Abstract

Molecular interaction databases are playing an ever more important role in our understanding of the biology of the cell. An increasing number of resources exist to provide these data and many of these have adopted the controlled vocabularies and agreed-upon standardised data formats produced by the Molecular Interaction workgroup of the Human Proteome Organization Proteomics Standards Initiative (HUPO PSI-MI). Use of these standards allows each resource to establish PSI Common QUery InterfaCe (PSICQUIC) service, making data from multiple resources available to the user in response to a single query. This cooperation between databases has been taken a stage further, with the establishment of the International Molecular Exchange (IMEx) consortium which aims to maximise the curation power of numerous data resources, and provide the user with a non-redundant, consistently annotated set of interaction data.
© 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Mesh:

Year:  2012        PMID: 22611057     DOI: 10.1002/pmic.201100484

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  24 in total

1.  Network reconstruction from infection cascades.

Authors:  Alfredo Braunstein; Alessandro Ingrosso; Anna Paola Muntoni
Journal:  J R Soc Interface       Date:  2019-02-28       Impact factor: 4.118

2.  Quantitative Proteome Profiling of Street Rabies Virus-Infected Mouse Hippocampal Synaptosomes.

Authors:  Xiaoning Sun; Ning Shi; Ying Li; Chunyan Dong; Maolin Zhang; Zhenhong Guan; Ming Duan
Journal:  Curr Microbiol       Date:  2016-05-07       Impact factor: 2.188

3.  Interlaboratory studies and initiatives developing standards for proteomics.

Authors:  Alexander R Ivanov; Christopher M Colangelo; Craig P Dufresne; David B Friedman; Kathryn S Lilley; Karl Mechtler; Brett S Phinney; Kristie L Rose; Paul A Rudnick; Brian C Searle; Scott A Shaffer; Susan T Weintraub
Journal:  Proteomics       Date:  2013-02-19       Impact factor: 3.984

4.  Integrating in silico resources to map a signaling network.

Authors:  Hanqing Liu; Tim N Beck; Erica A Golemis; Ilya G Serebriiskii
Journal:  Methods Mol Biol       Date:  2014

Review 5.  Controlled vocabularies and ontologies in proteomics: overview, principles and practice.

Authors:  Gerhard Mayer; Andrew R Jones; Pierre-Alain Binz; Eric W Deutsch; Sandra Orchard; Luisa Montecchi-Palazzi; Juan Antonio Vizcaíno; Henning Hermjakob; David Oveillero; Randall Julian; Christian Stephan; Helmut E Meyer; Martin Eisenacher
Journal:  Biochim Biophys Acta       Date:  2013-02-19

6.  Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

Authors:  J M Villaveces; R C Jiménez; P Porras; N Del-Toro; M Duesbury; M Dumousseau; S Orchard; H Choi; P Ping; N C Zong; M Askenazi; B H Habermann; Henning Hermjakob
Journal:  Database (Oxford)       Date:  2015-02-04       Impact factor: 3.451

7.  Protomers of protein hetero-oligomers tend to resemble each other more than expected.

Authors:  Oliviero Carugo
Journal:  Springerplus       Date:  2014-11-20

Review 8.  Drug-Like Protein-Protein Interaction Modulators: Challenges and Opportunities for Drug Discovery and Chemical Biology.

Authors:  Bruno O Villoutreix; Melaine A Kuenemann; Jean-Luc Poyet; Heriberto Bruzzoni-Giovanelli; Céline Labbé; David Lagorce; Olivier Sperandio; Maria A Miteva
Journal:  Mol Inform       Date:  2014-06-02       Impact factor: 3.353

9.  The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.

Authors:  Sandra Orchard; Mais Ammari; Bruno Aranda; Lionel Breuza; Leonardo Briganti; Fiona Broackes-Carter; Nancy H Campbell; Gayatri Chavali; Carol Chen; Noemi del-Toro; Margaret Duesbury; Marine Dumousseau; Eugenia Galeota; Ursula Hinz; Marta Iannuccelli; Sruthi Jagannathan; Rafael Jimenez; Jyoti Khadake; Astrid Lagreid; Luana Licata; Ruth C Lovering; Birgit Meldal; Anna N Melidoni; Mila Milagros; Daniele Peluso; Livia Perfetto; Pablo Porras; Arathi Raghunath; Sylvie Ricard-Blum; Bernd Roechert; Andre Stutz; Michael Tognolli; Kim van Roey; Gianni Cesareni; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2013-11-13       Impact factor: 16.971

10.  A new reference implementation of the PSICQUIC web service.

Authors:  Noemi del-Toro; Marine Dumousseau; Sandra Orchard; Rafael C Jimenez; Eugenia Galeota; Guillaume Launay; Johannes Goll; Karin Breuer; Keiichiro Ono; Lukasz Salwinski; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2013-05-13       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.