Literature DB >> 22609064

Transcriptional regulation of human-specific SVAF₁ retrotransposons by cis-regulatory MAST2 sequences.

Anastasia A Zabolotneva1, Olga Bantysh, Maria V Suntsova, Nadezhda Efimova, Galina V Malakhova, Gerald G Schumann, Nurshat M Gayfullin, Anton A Buzdin.   

Abstract

SVA elements represent the youngest family of hominid non-LTR retrotransposons. Recently, a human-specific subfamily (termed SVA(F1), CpG-SVA, or MAST2-SVA) was discovered representing fusion of the CpG island-containing exon 1 of the MAST2 gene and a 5'-truncated SVA. SVA(F1) includes at least 84 members, which suggests exceptionally high retrotransposition level. We investigated if the acquirement of the MAST2 CpG-island might play a role in the success of the SVA(F1) subfamily. We observed that in 16 samples representing seven human tissues, MAST2 was cotranscribed with the members of the SVA(F1) subfamily, but not with other retrotransposons. We found that the methylation status of the MAST2-derived sequences of SVA(F1) elements reversely correlates with the transcriptional activity of MAST2. The MAST2 sequence at the 5' end of SVA(F1) acts as a positive transcriptional regulator in human germ cells. Finally, in various testicular tissue samples we uncovered a transcriptional correlation of MAST2 with the human L1, Alu and SVA retrotransposons.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22609064     DOI: 10.1016/j.gene.2012.05.016

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  15 in total

1.  Intragenic multi-exon deletion in the FBN1 gene in a child with mildly dilated aortic sinus: a retrotransposal event.

Authors:  Maggie Brett; George Korovesis; Angeline H M Lai; Eileen C P Lim; Ene-Choo Tan
Journal:  J Hum Genet       Date:  2017-03-23       Impact factor: 3.172

2.  A Screen for Genomic Disorders of Infertility Identifies MAST2 Duplications Associated with Nonobstructive Azoospermia in Humans.

Authors:  Ni Huang; Yang Wen; Xuejiang Guo; Zheng Li; Juncheng Dai; Bixian Ni; Jun Yu; Yuan Lin; Wen Zhou; Bing Yao; Yue Jiang; Jiahao Sha; Donald F Conrad; Zhibin Hu
Journal:  Biol Reprod       Date:  2015-07-22       Impact factor: 4.285

Review 3.  Mechanisms of disease-associated SINE-VNTR-Alus.

Authors:  Abigail L Pfaff; Lewis M Singleton; Sulev Kõks
Journal:  Exp Biol Med (Maywood)       Date:  2022-04-06

4.  The minimal active human SVA retrotransposon requires only the 5'-hexamer and Alu-like domains.

Authors:  Dustin C Hancks; Prabhat K Mandal; Ling E Cheung; Haig H Kazazian
Journal:  Mol Cell Biol       Date:  2012-09-24       Impact factor: 4.272

5.  Screening and personalizing nootropic drugs and cognitive modulator regimens in silico.

Authors:  Leslie C Jellen; Alexander Aliper; Anton Buzdin; Alex Zhavoronkov
Journal:  Front Syst Neurosci       Date:  2015-02-06

6.  The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements.

Authors:  Elena M Pugacheva; Evgeny Teplyakov; Qiongfang Wu; Jingjing Li; Cheng Chen; Chengcheng Meng; Jian Liu; Susan Robinson; Dmitry Loukinov; Abdelhalim Boukaba; Andrew Paul Hutchins; Victor Lobanenkov; Alexander Strunnikov
Journal:  Epigenetics Chromatin       Date:  2016-08-31       Impact factor: 4.954

7.  Characterisation of the potential function of SVA retrotransposons to modulate gene expression patterns.

Authors:  Abigail L Savage; Vivien J Bubb; Gerome Breen; John P Quinn
Journal:  BMC Evol Biol       Date:  2013-05-21       Impact factor: 3.260

8.  Signaling pathway cloud regulation for in silico screening and ranking of the potential geroprotective drugs.

Authors:  Alex Zhavoronkov; Anton A Buzdin; Andrey V Garazha; Nikolay M Borisov; Alexey A Moskalev
Journal:  Front Genet       Date:  2014-03-03       Impact factor: 4.599

Review 9.  Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline.

Authors:  James H Crichton; Donncha S Dunican; Marie Maclennan; Richard R Meehan; Ian R Adams
Journal:  Cell Mol Life Sci       Date:  2013-09-18       Impact factor: 9.261

10.  SVA retrotransposons as modulators of gene expression.

Authors:  John P Quinn; Vivien J Bubb
Journal:  Mob Genet Elements       Date:  2014-07-24
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