Literature DB >> 22606163

1-(5-Benzyl-sulfanyl-2,2-dimethyl-2,3-dihydro-1,3,4-thia-diazol-3-yl)-2,2-dimethyl-propan-1-one.

Mohd Sukeri Mohd Yusof, Fatimah Abdul Mutalib, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

In the title compound, C(16)H(22)N(2)OS(2), the S atom of the thia-diazole ring and the attached methyl groups are disordered over two orientations with a refined site-occupancy ratio of 0.641 (11):0.359 (11). The thia-diazole ring is in a twist conformation in both disorder components. The mean plane through the thia-diazole ring makes dihedral angles of 77.39 (8) (major component) and 67.45 (11)° (minor component) with the benzene ring. Intra-molecular C-H⋯N inter-actions generate two S(6) ring motifs. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds into zigzag chains parallel to the b axis.

Entities:  

Year:  2012        PMID: 22606163      PMCID: PMC3344160          DOI: 10.1107/S1600536812012639

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the pharmacological properties of thia­diazole derivatives, see: Noolvi et al. (2011 ▶); Yusuf et al. (2008 ▶). For a related structure, see: Fun et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H22N2OS2 M = 322.48 Monoclinic, a = 16.6174 (2) Å b = 10.5178 (1) Å c = 9.6758 (1) Å β = 96.345 (1)° V = 1680.76 (3) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 100 K 0.26 × 0.19 × 0.12 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.922, T max = 0.962 22216 measured reflections 5972 independent reflections 4678 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.092 S = 1.02 5972 reflections 225 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012639/rz2718sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012639/rz2718Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812012639/rz2718Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H22N2OS2F(000) = 688
Mr = 322.48Dx = 1.274 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6904 reflections
a = 16.6174 (2) Åθ = 2.9–32.3°
b = 10.5178 (1) ŵ = 0.32 mm1
c = 9.6758 (1) ÅT = 100 K
β = 96.345 (1)°Block, colourless
V = 1680.76 (3) Å30.26 × 0.19 × 0.12 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5972 independent reflections
Radiation source: fine-focus sealed tube4678 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 32.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −25→13
Tmin = 0.922, Tmax = 0.962k = −15→15
22216 measured reflectionsl = −12→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0355P)2 + 0.5012P] where P = (Fo2 + 2Fc2)/3
5972 reflections(Δ/σ)max = 0.001
225 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.36774 (15)0.26997 (19)0.2500 (3)0.0233 (4)0.641 (11)
S1X0.3827 (2)0.28188 (18)0.2089 (6)0.0216 (6)0.359 (11)
S20.214397 (18)0.34659 (3)0.07503 (3)0.01843 (7)
O10.41502 (5)−0.14077 (8)0.14798 (9)0.02125 (18)
N10.28175 (6)0.11644 (9)0.08318 (10)0.01500 (18)
N20.34822 (6)0.04481 (9)0.13754 (10)0.01761 (19)
C10.09412 (8)0.41815 (12)−0.21819 (12)0.0227 (2)
H1A0.14670.4243−0.24750.027*
C20.03192 (8)0.49319 (13)−0.28083 (14)0.0279 (3)
H2A0.04200.5505−0.35280.033*
C3−0.04488 (8)0.48490 (12)−0.23872 (14)0.0250 (3)
H3A−0.08750.5360−0.28220.030*
C4−0.05940 (7)0.40174 (11)−0.13292 (13)0.0223 (2)
H4A−0.11200.3961−0.10360.027*
C50.00308 (7)0.32658 (11)−0.06983 (12)0.0193 (2)
H5A−0.00700.27010.00290.023*
C60.08002 (7)0.33358 (10)−0.11244 (11)0.0166 (2)
C70.14763 (7)0.25122 (11)−0.04636 (12)0.0183 (2)
H7A0.17860.2155−0.11900.022*
H7B0.12500.17980.00360.022*
C80.28772 (7)0.23196 (10)0.12453 (11)0.0161 (2)
C90.41461 (7)0.11385 (10)0.22346 (11)0.0159 (2)
C100.4419 (3)0.0577 (4)0.3624 (4)0.0267 (7)0.641 (11)
H10A0.4695−0.02320.35000.040*0.641 (11)
H10B0.39490.04310.41310.040*0.641 (11)
H10C0.47940.11650.41530.040*0.641 (11)
C10X0.4118 (6)0.0686 (8)0.3771 (8)0.0296 (14)0.359 (11)
H10D0.4294−0.02020.38600.044*0.359 (11)
H10E0.35630.07600.40160.044*0.359 (11)
H10F0.44790.12180.43970.044*0.359 (11)
C110.4847 (2)0.1317 (4)0.1339 (4)0.0252 (7)0.641 (11)
H11A0.50990.04910.11950.038*0.641 (11)
H11B0.52510.18920.18140.038*0.641 (11)
H11C0.46390.16800.04380.038*0.641 (11)
C11X0.4988 (4)0.1030 (7)0.1826 (10)0.0275 (14)0.359 (11)
H11D0.51840.01580.19860.041*0.359 (11)
H11E0.53460.16200.23850.041*0.359 (11)
H11F0.49830.12420.08390.041*0.359 (11)
C120.35519 (7)−0.08096 (10)0.10018 (11)0.0146 (2)
C130.28826 (7)−0.14282 (10)−0.00111 (11)0.0147 (2)
C140.28175 (7)−0.07640 (11)−0.14377 (11)0.0178 (2)
H14A0.3346−0.0783−0.17990.027*
H14B0.26480.0120−0.13360.027*
H14C0.2417−0.1207−0.20860.027*
C150.20567 (7)−0.14025 (11)0.05629 (12)0.0202 (2)
H15A0.1667−0.1908−0.00410.030*
H15B0.1865−0.05230.05920.030*
H15C0.2112−0.17600.15040.030*
C160.31270 (8)−0.28173 (10)−0.02075 (13)0.0210 (2)
H16A0.3649−0.2846−0.05880.031*
H16B0.2715−0.3239−0.08520.031*
H16C0.3173−0.32550.06920.031*
U11U22U33U12U13U23
S10.0205 (5)0.0179 (4)0.0287 (7)0.0056 (3)−0.0097 (5)−0.0087 (4)
S1X0.0196 (8)0.0125 (4)0.0302 (13)−0.0001 (4)−0.0078 (8)−0.0024 (6)
S20.01715 (14)0.01447 (12)0.02242 (14)0.00448 (10)−0.00341 (11)−0.00322 (10)
O10.0199 (4)0.0168 (4)0.0253 (4)0.0047 (3)−0.0053 (3)−0.0004 (3)
N10.0120 (4)0.0150 (4)0.0175 (4)0.0024 (3)−0.0007 (3)0.0005 (3)
N20.0152 (5)0.0142 (4)0.0215 (5)0.0033 (3)−0.0065 (4)−0.0029 (3)
C10.0196 (6)0.0273 (6)0.0219 (6)0.0068 (5)0.0048 (5)0.0048 (5)
C20.0276 (7)0.0321 (7)0.0243 (6)0.0092 (5)0.0042 (5)0.0108 (5)
C30.0204 (6)0.0257 (6)0.0277 (6)0.0078 (5)−0.0030 (5)0.0033 (5)
C40.0147 (5)0.0203 (5)0.0314 (6)0.0012 (4)0.0002 (5)−0.0008 (5)
C50.0177 (6)0.0171 (5)0.0227 (5)−0.0007 (4)0.0003 (4)0.0007 (4)
C60.0167 (5)0.0152 (5)0.0168 (5)0.0029 (4)−0.0024 (4)−0.0018 (4)
C70.0169 (5)0.0163 (5)0.0204 (5)0.0027 (4)−0.0037 (4)−0.0021 (4)
C80.0149 (5)0.0157 (5)0.0171 (5)0.0023 (4)−0.0013 (4)−0.0013 (4)
C90.0143 (5)0.0144 (4)0.0180 (5)0.0018 (4)−0.0029 (4)−0.0025 (4)
C100.037 (2)0.0245 (11)0.0163 (13)−0.0004 (14)−0.0060 (14)−0.0003 (9)
C10X0.043 (4)0.025 (2)0.020 (2)−0.009 (3)0.001 (3)0.0002 (17)
C110.0236 (14)0.0246 (14)0.0280 (16)−0.0058 (10)0.0061 (12)−0.0046 (11)
C11X0.020 (2)0.024 (2)0.040 (4)−0.0046 (18)0.007 (2)−0.010 (2)
C120.0162 (5)0.0134 (4)0.0142 (5)0.0011 (4)0.0018 (4)0.0008 (4)
C130.0153 (5)0.0136 (4)0.0149 (5)−0.0005 (4)0.0007 (4)−0.0004 (4)
C140.0199 (6)0.0182 (5)0.0147 (5)−0.0004 (4)−0.0004 (4)−0.0001 (4)
C150.0178 (6)0.0202 (5)0.0229 (5)−0.0037 (4)0.0043 (5)−0.0005 (4)
C160.0258 (6)0.0142 (5)0.0223 (5)0.0004 (4)−0.0004 (5)−0.0015 (4)
S1—C81.7448 (16)C9—C111.539 (3)
S1—C91.8473 (15)C9—C10X1.566 (8)
S1X—C81.774 (2)C10—H10A0.9800
S1X—C91.846 (2)C10—H10B0.9800
S2—C81.7432 (11)C10—H10C0.9800
S2—C71.8245 (12)C10X—H10D0.9800
O1—C121.2233 (13)C10X—H10E0.9800
N1—C81.2795 (14)C10X—H10F0.9800
N1—N21.3913 (13)C11—H11A0.9800
N2—C121.3796 (14)C11—H11B0.9800
N2—C91.4942 (14)C11—H11C0.9800
C1—C21.3857 (17)C11X—H11D0.9800
C1—C61.3950 (16)C11X—H11E0.9800
C1—H1A0.9500C11X—H11F0.9800
C2—C31.3847 (18)C12—C131.5428 (15)
C2—H2A0.9500C13—C161.5339 (15)
C3—C41.3878 (18)C13—C151.5365 (16)
C3—H3A0.9500C13—C141.5401 (15)
C4—C51.3912 (17)C14—H14A0.9800
C4—H4A0.9500C14—H14B0.9800
C5—C61.3880 (16)C14—H14C0.9800
C5—H5A0.9500C15—H15A0.9800
C6—C71.5042 (16)C15—H15B0.9800
C7—H7A0.9900C15—H15C0.9800
C7—H7B0.9900C16—H16A0.9800
C9—C101.492 (4)C16—H16B0.9800
C9—C11X1.499 (6)C16—H16C0.9800
C8—S1—C990.02 (7)C11X—C9—S1121.6 (2)
C8—S1X—C989.16 (10)C11—C9—S1109.09 (13)
C8—S2—C798.83 (5)C10X—C9—S194.7 (3)
C8—N1—N2111.41 (9)C9—C10—H10A109.5
C12—N2—N1120.42 (9)C9—C10—H10B109.5
C12—N2—C9122.25 (9)C9—C10—H10C109.5
N1—N2—C9116.98 (8)C9—C10X—H10D109.5
C2—C1—C6120.42 (12)C9—C10X—H10E109.5
C2—C1—H1A119.8H10D—C10X—H10E109.5
C6—C1—H1A119.8C9—C10X—H10F109.5
C3—C2—C1120.18 (12)H10D—C10X—H10F109.5
C3—C2—H2A119.9H10E—C10X—H10F109.5
C1—C2—H2A119.9C9—C11—H11A109.5
C2—C3—C4119.85 (11)C9—C11—H11B109.5
C2—C3—H3A120.1C9—C11—H11C109.5
C4—C3—H3A120.1C9—C11X—H11D109.5
C3—C4—C5119.98 (12)C9—C11X—H11E109.5
C3—C4—H4A120.0H11D—C11X—H11E109.5
C5—C4—H4A120.0C9—C11X—H11F109.5
C6—C5—C4120.45 (11)H11D—C11X—H11F109.5
C6—C5—H5A119.8H11E—C11X—H11F109.5
C4—C5—H5A119.8O1—C12—N2118.84 (10)
C5—C6—C1119.12 (11)O1—C12—C13121.47 (9)
C5—C6—C7120.83 (10)N2—C12—C13119.69 (9)
C1—C6—C7120.06 (11)C16—C13—C15108.72 (9)
C6—C7—S2109.24 (8)C16—C13—C14108.32 (9)
C6—C7—H7A109.8C15—C13—C14109.81 (9)
S2—C7—H7A109.8C16—C13—C12107.35 (9)
C6—C7—H7B109.8C15—C13—C12111.90 (9)
S2—C7—H7B109.8C14—C13—C12110.64 (9)
H7A—C7—H7B108.3C13—C14—H14A109.5
N1—C8—S2122.90 (9)C13—C14—H14B109.5
N1—C8—S1117.51 (10)H14A—C14—H14B109.5
S2—C8—S1119.24 (7)C13—C14—H14C109.5
N1—C8—S1X117.33 (12)H14A—C14—H14C109.5
S2—C8—S1X118.74 (9)H14B—C14—H14C109.5
C10—C9—N2116.2 (2)C13—C15—H15A109.5
C10—C9—C11X90.4 (3)C13—C15—H15B109.5
N2—C9—C11X118.0 (3)H15A—C15—H15B109.5
C10—C9—C11112.43 (18)C13—C15—H15C109.5
N2—C9—C11107.73 (16)H15A—C15—H15C109.5
N2—C9—C10X106.4 (3)H15B—C15—H15C109.5
C11X—C9—C10X110.7 (3)C13—C16—H16A109.5
N2—C9—S1X103.56 (9)C13—C16—H16B109.5
C11X—C9—S1X108.7 (2)H16A—C16—H16B109.5
C10X—C9—S1X109.0 (3)C13—C16—H16C109.5
C10—C9—S1108.51 (15)H16A—C16—H16C109.5
N2—C9—S1102.27 (8)H16B—C16—H16C109.5
C8—N1—N2—C12−176.95 (10)N1—N2—C9—C11−103.8 (2)
C8—N1—N2—C9−3.69 (13)C12—N2—C9—C10X−77.1 (4)
C6—C1—C2—C30.1 (2)N1—N2—C9—C10X109.8 (4)
C1—C2—C3—C40.4 (2)C12—N2—C9—S1X168.1 (2)
C2—C3—C4—C5−0.26 (19)N1—N2—C9—S1X−5.0 (3)
C3—C4—C5—C6−0.34 (18)C12—N2—C9—S1−175.75 (17)
C4—C5—C6—C10.79 (17)N1—N2—C9—S111.12 (18)
C4—C5—C6—C7−179.04 (11)C8—S1X—C9—C10−123.1 (4)
C2—C1—C6—C5−0.66 (18)C8—S1X—C9—N28.7 (3)
C2—C1—C6—C7179.17 (12)C8—S1X—C9—C11X135.0 (5)
C5—C6—C7—S2−103.10 (11)C8—S1X—C9—C11118.0 (4)
C1—C6—C7—S277.07 (12)C8—S1X—C9—C10X−104.3 (5)
C8—S2—C7—C6−176.36 (8)C8—S1X—C9—S1−78.5 (3)
N2—N1—C8—S2179.94 (8)C8—S1—C9—C10−134.8 (3)
N2—N1—C8—S1−7.0 (2)C8—S1—C9—N2−11.51 (19)
N2—N1—C8—S1X11.7 (3)C8—S1—C9—C11X122.7 (5)
C7—S2—C8—N1−4.34 (11)C8—S1—C9—C11102.4 (3)
C7—S2—C8—S1−177.32 (18)C8—S1—C9—C10X−119.5 (4)
C7—S2—C8—S1X163.8 (3)C8—S1—C9—S1X84.9 (3)
C9—S1—C8—N111.8 (2)N1—N2—C12—O1178.79 (10)
C9—S1—C8—S2−174.86 (9)C9—N2—C12—O15.89 (16)
C9—S1—C8—S1X−81.9 (3)N1—N2—C12—C13−0.76 (15)
C9—S1X—C8—N1−12.7 (3)C9—N2—C12—C13−173.67 (9)
C9—S1X—C8—S2178.57 (12)O1—C12—C13—C161.05 (14)
C9—S1X—C8—S182.3 (3)N2—C12—C13—C16−179.41 (10)
C12—N2—C9—C10−57.8 (3)O1—C12—C13—C15120.25 (11)
N1—N2—C9—C10129.1 (2)N2—C12—C13—C15−60.21 (13)
C12—N2—C9—C11X48.0 (5)O1—C12—C13—C14−116.95 (11)
N1—N2—C9—C11X−125.2 (4)N2—C12—C13—C1462.59 (13)
C12—N2—C9—C1169.4 (2)
D—H···AD—HH···AD···AD—H···A
C14—H14B···N10.982.362.9893 (15)122
C15—H15B···N10.982.372.9803 (15)120
C11—H11B···O1i0.982.563.490 (4)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14B⋯N10.982.362.9893 (15)122
C15—H15B⋯N10.982.372.9803 (15)120
C11—H11B⋯O1i0.982.563.490 (4)159

Symmetry code: (i) .

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