Literature DB >> 22606157

N-Cyclo-hexyl-pyrrolidine-1-carbothio-amide.

Yu-Feng Li1.   

Abstract

In the title mol-ecule, C(11)H(20)N(2)S, the five-membered ring has an envelope conformation and the cyclo-hexane ring is in a chair conformation. The N-H group is not involved in any intra- or inter-molecular inter-actions.

Entities:  

Year:  2012        PMID: 22606157      PMCID: PMC3344154          DOI: 10.1107/S1600536812012627

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal properties of pyrrolidine compounds, see: Yang et al. (1997 ▶). For related structures, see: Köhn et al. (2004 ▶); Li (2011 ▶).

Experimental

Crystal data

C11H20N2S M = 212.35 Orthorhombic, a = 9.3808 (19) Å b = 10.925 (2) Å c = 23.540 (5) Å V = 2412.6 (8) Å3 Z = 8 Mo Kα radiation μ = 0.24 mm−1 T = 293 K 0.22 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer 22078 measured reflections 2766 independent reflections 1700 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.190 S = 1.18 2766 reflections 127 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012627/lh5439sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012627/lh5439Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812012627/lh5439Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H20N2SF(000) = 928
Mr = 212.35Dx = 1.169 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 1700 reflections
a = 9.3808 (19) Åθ = 3.4–27.5°
b = 10.925 (2) ŵ = 0.24 mm1
c = 23.540 (5) ÅT = 293 K
V = 2412.6 (8) Å3Block, colorless
Z = 80.22 × 0.20 × 0.18 mm
Bruker SMART CCD diffractometer1700 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.046
Graphite monochromatorθmax = 27.5°, θmin = 3.4°
φ and ω scansh = −12→12
22078 measured reflectionsk = −13→14
2766 independent reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H-atom parameters constrained
S = 1.18w = 1/[σ2(Fo2) + (0.1021P)2] where P = (Fo2 + 2Fc2)/3
2766 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.07717 (8)0.34275 (5)0.16033 (2)0.0727 (3)
N20.1756 (2)0.57053 (15)0.14966 (7)0.0649 (5)
H2A0.21050.63540.16500.078*
N10.1569 (2)0.49963 (16)0.24023 (7)0.0625 (5)
C50.1402 (2)0.47798 (18)0.18465 (8)0.0533 (5)
C60.1600 (2)0.57042 (18)0.08782 (8)0.0565 (6)
H6A0.09410.50460.07730.068*
C70.3007 (3)0.54772 (19)0.05863 (8)0.0604 (6)
H7A0.33780.46860.07010.072*
H7B0.36870.60980.07020.072*
C90.2197 (3)0.6700 (2)−0.02522 (9)0.0637 (6)
H9A0.28650.7359−0.01790.076*
H9B0.20320.6664−0.06590.076*
C100.0817 (2)0.6969 (2)0.00449 (10)0.0647 (6)
H10A0.01030.6382−0.00760.078*
H10B0.04900.7778−0.00640.078*
C110.0964 (2)0.6912 (2)0.06890 (10)0.0657 (6)
H11A0.15690.75780.08170.079*
H11B0.00340.70150.08620.079*
C80.2838 (3)0.5505 (2)−0.00562 (8)0.0655 (6)
H8A0.37630.5396−0.02330.079*
H8B0.22300.4834−0.01750.079*
C40.2130 (3)0.6141 (2)0.26409 (9)0.0751 (7)
H4A0.15030.68240.25570.090*
H4B0.30730.63190.24930.090*
C30.2184 (4)0.5887 (3)0.32761 (10)0.0947 (10)
H3A0.31200.55960.33880.114*
H3B0.19600.66190.34920.114*
C20.1095 (5)0.4934 (3)0.33665 (10)0.1053 (11)
H2B0.01630.53020.34180.126*
H2C0.13200.44510.37000.126*
C10.1110 (4)0.4151 (3)0.28475 (9)0.0917 (9)
H1A0.17760.34770.28880.110*
H1B0.01690.38260.27680.110*
U11U22U33U12U13U23
S10.1120 (6)0.0526 (4)0.0536 (4)−0.0127 (3)−0.0018 (3)−0.0005 (2)
N20.0950 (14)0.0592 (11)0.0406 (9)−0.0187 (10)0.0007 (8)−0.0041 (7)
N10.0922 (14)0.0560 (10)0.0393 (9)0.0013 (9)0.0052 (9)−0.0024 (7)
C50.0651 (13)0.0519 (11)0.0429 (10)0.0033 (9)0.0023 (9)−0.0004 (8)
C60.0732 (14)0.0557 (12)0.0408 (10)−0.0137 (10)−0.0010 (9)−0.0014 (8)
C70.0765 (14)0.0565 (12)0.0482 (11)0.0150 (10)−0.0002 (10)0.0070 (9)
C90.0625 (14)0.0741 (14)0.0545 (12)−0.0005 (10)−0.0019 (10)0.0182 (10)
C100.0600 (14)0.0720 (14)0.0620 (13)0.0034 (11)−0.0089 (10)0.0097 (11)
C110.0650 (14)0.0706 (14)0.0617 (13)0.0093 (11)0.0000 (10)−0.0031 (11)
C80.0774 (15)0.0722 (14)0.0468 (11)0.0104 (12)0.0073 (10)0.0057 (10)
C40.1016 (19)0.0753 (14)0.0484 (12)−0.0030 (14)−0.0013 (12)−0.0143 (11)
C30.139 (3)0.096 (2)0.0492 (13)0.0122 (19)−0.0130 (15)−0.0142 (12)
C20.155 (3)0.119 (3)0.0421 (14)0.003 (2)0.0090 (15)0.0021 (14)
C10.156 (3)0.0742 (17)0.0452 (13)−0.0016 (16)0.0119 (14)0.0066 (11)
S1—C51.691 (2)C10—H10A0.9700
N2—C51.346 (3)C10—H10B0.9700
N2—C61.463 (2)C11—H11A0.9700
N2—H2A0.8600C11—H11B0.9700
N1—C51.339 (3)C8—H8A0.9700
N1—C11.462 (3)C8—H8B0.9700
N1—C41.469 (3)C4—C31.522 (3)
C6—C71.509 (3)C4—H4A0.9700
C6—C111.515 (3)C4—H4B0.9700
C6—H6A0.9800C3—C21.475 (4)
C7—C81.521 (3)C3—H3A0.9700
C7—H7A0.9700C3—H3B0.9700
C7—H7B0.9700C2—C11.491 (4)
C9—C101.500 (3)C2—H2B0.9700
C9—C81.510 (3)C2—H2C0.9700
C9—H9A0.9700C1—H1A0.9700
C9—H9B0.9700C1—H1B0.9700
C10—C111.524 (3)
C5—N2—C6125.71 (17)C10—C11—H11A109.4
C5—N2—H2A117.1C6—C11—H11B109.4
C6—N2—H2A117.1C10—C11—H11B109.4
C5—N1—C1123.67 (19)H11A—C11—H11B108.0
C5—N1—C4124.49 (18)C9—C8—C7111.29 (18)
C1—N1—C4111.69 (18)C9—C8—H8A109.4
N1—C5—N2115.87 (18)C7—C8—H8A109.4
N1—C5—S1121.75 (16)C9—C8—H8B109.4
N2—C5—S1122.37 (15)C7—C8—H8B109.4
N2—C6—C7111.45 (17)H8A—C8—H8B108.0
N2—C6—C11109.34 (16)N1—C4—C3103.42 (19)
C7—C6—C11110.72 (16)N1—C4—H4A111.1
N2—C6—H6A108.4C3—C4—H4A111.1
C7—C6—H6A108.4N1—C4—H4B111.1
C11—C6—H6A108.4C3—C4—H4B111.1
C6—C7—C8110.99 (18)H4A—C4—H4B109.0
C6—C7—H7A109.4C2—C3—C4104.3 (2)
C8—C7—H7A109.4C2—C3—H3A110.9
C6—C7—H7B109.4C4—C3—H3A110.9
C8—C7—H7B109.4C2—C3—H3B110.9
H7A—C7—H7B108.0C4—C3—H3B110.9
C10—C9—C8111.75 (18)H3A—C3—H3B108.9
C10—C9—H9A109.3C3—C2—C1106.3 (2)
C8—C9—H9A109.3C3—C2—H2B110.5
C10—C9—H9B109.3C1—C2—H2B110.5
C8—C9—H9B109.3C3—C2—H2C110.5
H9A—C9—H9B107.9C1—C2—H2C110.5
C9—C10—C11112.17 (18)H2B—C2—H2C108.7
C9—C10—H10A109.2N1—C1—C2103.2 (2)
C11—C10—H10A109.2N1—C1—H1A111.1
C9—C10—H10B109.2C2—C1—H1A111.1
C11—C10—H10B109.2N1—C1—H1B111.1
H10A—C10—H10B107.9C2—C1—H1B111.1
C6—C11—C10111.34 (18)H1A—C1—H1B109.1
C6—C11—H11A109.4
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