Literature DB >> 22606156

1-(4-Chloro-phen-yl)-3-(morpholin-4-yl)urea.

Yu-Feng Li1, Jin-He Jiang.   

Abstract

In the title mol-ecule, C(11)H(14)ClN(3)O(2), the morpholine ring has a chair conformation. In the crystal, pairs of mol-ecules are linked into inversion dimers by N-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22606156      PMCID: PMC3344153          DOI: 10.1107/S1600536812012615

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal properties of related compounds, see: Yang et al. (1997 ▶). For a related structure, see: Li (2011 ▶).

Experimental

Crystal data

C11H14ClN3O2 M = 255.70 Monoclinic, a = 13.684 (3) Å b = 9.3612 (19) Å c = 9.758 (2) Å β = 94.03 (3)° V = 1246.8 (4) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 293 K 0.22 × 0.20 × 0.19 mm

Data collection

Bruker SMART CCD diffractometer 11894 measured reflections 2857 independent reflections 1502 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.180 S = 1.17 2857 reflections 154 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker 1997 ▶); cell refinement: SAINT (Bruker 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012615/lh5438sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012615/lh5438Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812012615/lh5438Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H14ClN3O2F(000) = 536
Mr = 255.70Dx = 1.362 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1502 reflections
a = 13.684 (3) Åθ = 3.0–27.5°
b = 9.3612 (19) ŵ = 0.30 mm1
c = 9.758 (2) ÅT = 293 K
β = 94.03 (3)°Block, colorless
V = 1246.8 (4) Å30.22 × 0.20 × 0.19 mm
Z = 4
Bruker SMART CCD diffractometer1502 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.043
Graphite monochromatorθmax = 27.5°, θmin = 3.0°
φ and ω scansh = −17→17
11894 measured reflectionsk = −12→12
2857 independent reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.085P)2 + 0.0207P] where P = (Fo2 + 2Fc2)/3
2857 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.92775 (5)0.08842 (12)0.30739 (8)0.0988 (4)
O21.39233 (12)0.0438 (2)0.09026 (16)0.0612 (5)
C61.18312 (16)0.0784 (3)0.0412 (2)0.0493 (6)
N31.25450 (14)0.0646 (2)−0.0549 (2)0.0561 (5)
H3A1.23450.0708−0.14030.067*
N11.35490 (13)0.0024 (2)−0.26930 (19)0.0535 (5)
O11.35069 (15)−0.0687 (2)−0.55127 (17)0.0697 (5)
N21.40369 (14)0.0221 (3)−0.1380 (2)0.0656 (6)
H2A1.46670.0212−0.12920.079*
C51.35207 (17)0.0425 (3)−0.0260 (2)0.0504 (6)
C81.1131 (2)0.0212 (3)0.2519 (3)0.0674 (7)
H8A1.1185−0.02170.33810.081*
C111.09794 (16)0.1525 (3)−0.0004 (3)0.0592 (6)
H11A1.09310.1986−0.08500.071*
C91.02870 (18)0.0905 (3)0.2072 (3)0.0644 (7)
C101.02095 (18)0.1582 (3)0.0826 (3)0.0672 (7)
H10A0.96410.20760.05430.081*
C71.19009 (18)0.0152 (3)0.1684 (2)0.0608 (7)
H7A1.2474−0.03210.19860.073*
C31.3409 (2)0.0735 (3)−0.5071 (3)0.0734 (8)
H3B1.27200.0954−0.50200.088*
H3C1.36690.1373−0.57390.088*
C41.3938 (2)0.0989 (3)−0.3690 (3)0.0666 (7)
H4A1.46340.0822−0.37410.080*
H4B1.38470.1972−0.34090.080*
C21.3146 (2)−0.1633 (3)−0.4542 (2)0.0763 (8)
H2B1.3226−0.2609−0.48490.092*
H2C1.2451−0.1462−0.44780.092*
C11.3671 (2)−0.1449 (3)−0.3145 (3)0.0709 (8)
H1A1.3404−0.2101−0.24960.085*
H1B1.4362−0.1662−0.31910.085*
U11U22U33U12U13U23
Cl10.0664 (5)0.1530 (10)0.0797 (6)−0.0135 (5)0.0244 (4)−0.0336 (5)
O20.0541 (9)0.0801 (13)0.0483 (10)0.0043 (8)−0.0044 (8)−0.0082 (8)
C60.0484 (12)0.0545 (15)0.0446 (12)0.0017 (10)0.0000 (10)−0.0067 (10)
N30.0462 (10)0.0747 (15)0.0468 (11)0.0059 (9)−0.0007 (8)−0.0015 (9)
N10.0532 (11)0.0632 (14)0.0438 (10)0.0018 (9)0.0020 (9)−0.0021 (9)
O10.0918 (13)0.0737 (13)0.0449 (9)0.0106 (10)0.0143 (9)0.0027 (9)
N20.0474 (11)0.0996 (19)0.0493 (11)0.0054 (11)−0.0004 (9)−0.0114 (11)
C50.0500 (12)0.0519 (15)0.0488 (13)0.0021 (10)0.0005 (10)−0.0025 (10)
C80.0644 (15)0.090 (2)0.0474 (13)−0.0009 (15)0.0025 (12)−0.0051 (13)
C110.0540 (13)0.0626 (17)0.0605 (14)0.0053 (12)0.0002 (11)0.0021 (13)
C90.0565 (14)0.080 (2)0.0576 (15)−0.0081 (13)0.0085 (12)−0.0203 (14)
C100.0518 (13)0.073 (2)0.0767 (18)0.0061 (13)0.0022 (13)−0.0102 (15)
C70.0557 (13)0.0742 (19)0.0519 (14)0.0092 (13)0.0002 (11)−0.0006 (13)
C30.093 (2)0.069 (2)0.0590 (16)0.0070 (16)0.0062 (14)0.0129 (14)
C40.0748 (17)0.0613 (18)0.0641 (16)−0.0030 (13)0.0083 (13)0.0052 (13)
C20.111 (2)0.0663 (19)0.0530 (15)−0.0077 (17)0.0139 (15)−0.0052 (13)
C10.103 (2)0.0593 (17)0.0501 (13)0.0035 (16)0.0059 (14)0.0055 (12)
Cl1—C91.748 (3)C8—H8A0.9300
O2—C51.226 (3)C11—C101.374 (3)
C6—C71.373 (3)C11—H11A0.9300
C6—C111.392 (3)C9—C101.369 (4)
C6—N31.407 (3)C10—H10A0.9300
N3—C51.361 (3)C7—H7A0.9300
N3—H3A0.8600C3—C41.503 (4)
N1—N21.414 (3)C3—H3B0.9700
N1—C41.456 (3)C3—H3C0.9700
N1—C11.461 (3)C4—H4A0.9700
O1—C31.409 (4)C4—H4B0.9700
O1—C21.411 (3)C2—C11.505 (4)
N2—C51.356 (3)C2—H2B0.9700
N2—H2A0.8600C2—H2C0.9700
C8—C91.369 (4)C1—H1A0.9700
C8—C71.377 (4)C1—H1B0.9700
C7—C6—C11118.8 (2)C6—C7—C8120.7 (2)
C7—C6—N3123.8 (2)C6—C7—H7A119.7
C11—C6—N3117.3 (2)C8—C7—H7A119.7
C5—N3—C6126.35 (19)O1—C3—C4112.0 (2)
C5—N3—H3A116.8O1—C3—H3B109.2
C6—N3—H3A116.8C4—C3—H3B109.2
N2—N1—C4110.6 (2)O1—C3—H3C109.2
N2—N1—C1109.9 (2)C4—C3—H3C109.2
C4—N1—C1109.2 (2)H3B—C3—H3C107.9
C3—O1—C2110.0 (2)N1—C4—C3109.0 (2)
C5—N2—N1120.60 (19)N1—C4—H4A109.9
C5—N2—H2A119.7C3—C4—H4A109.9
N1—N2—H2A119.7N1—C4—H4B109.9
O2—C5—N2121.4 (2)C3—C4—H4B109.9
O2—C5—N3124.1 (2)H4A—C4—H4B108.3
N2—C5—N3114.4 (2)O1—C2—C1111.6 (2)
C9—C8—C7119.6 (3)O1—C2—H2B109.3
C9—C8—H8A120.2C1—C2—H2B109.3
C7—C8—H8A120.2O1—C2—H2C109.3
C10—C11—C6120.6 (2)C1—C2—H2C109.3
C10—C11—H11A119.7H2B—C2—H2C108.0
C6—C11—H11A119.7N1—C1—C2108.9 (2)
C8—C9—C10120.9 (2)N1—C1—H1A109.9
C8—C9—Cl1119.9 (2)C2—C1—H1A109.9
C10—C9—Cl1119.1 (2)N1—C1—H1B109.9
C9—C10—C11119.4 (2)C2—C1—H1B109.9
C9—C10—H10A120.3H1A—C1—H1B108.3
C11—C10—H10A120.3
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2i0.862.032.865 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.862.032.865 (3)162

Symmetry code: (i) .

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