Literature DB >> 22606125

(E)-4-[(1-Benzyl-4-benzyl-idene-2,5-di-oxopyrrolidin-3-yl)meth-yl]benzalde-hyde 0.25-hydrate.

Tao Yu1, Yimin Hu.   

Abstract

The crystal structure of the title compound, C(26)H(21)NO(3)·0.25H(2)O, reveals one stereogenic centre in the mol-ecule. Nevertheless, due to the observed centrosymmetric space group, both enanti-omers are present in the crystal packing. The water molecule of crystallisation is located on a crystallographic inversion center. The mol-ecule contains one five-membered ring (A) and three six-membered rings (benzyl ring B, benzyl-idene ring C and formyl-benzyl ring D). All four rings are not coplanar: the dihedral angles between rings A and B, A and C, and A and D are 70.35 (9), 33.8 (1) and 60.30 (9)°, respectively. In the crystal, pairs of weak C-H⋯O inter-actions lead to the formation of centrosymmetric dimers. Additional C-H⋯O inter-actions link the dimers into chains along [011].

Entities:  

Year:  2012        PMID: 22606125      PMCID: PMC3344122          DOI: 10.1107/S1600536812012160

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For palladium-catalysed coupling reactions, see: Hu et al. (2011 ▶). For related active pharmaceutical compounds, see: Hu et al. (2009a ▶,b ▶). Ffor the physiological activity of dioxo­pyrrol­idinbenzaldehyde derivatives, see: Pitchumani & Vijaikumar (2010 ▶). F palladium-catalysed inter- and intra­molecular reactions, see: Hu et al. (2010a ▶,b ▶).

Experimental

Crystal data

C26H21NO3·0.25H2O M = 399.94 Triclinic, a = 7.7360 (15) Å b = 12.441 (3) Å c = 12.577 (3) Å α = 64.14 (3)° β = 81.14 (2)° γ = 86.46 (3)° V = 1076.2 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 291 K 0.28 × 0.22 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.978, T max = 0.984 8445 measured reflections 4224 independent reflections 3065 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.149 S = 1.09 4224 reflections 277 parameters 1 restraint H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012160/im2364sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012160/im2364Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812012160/im2364Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H21NO3·0.25H2OZ = 2
Mr = 399.94F(000) = 421
Triclinic, P1Dx = 1.234 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7360 (15) ÅCell parameters from 3716 reflections
b = 12.441 (3) Åθ = 2.1–24.7°
c = 12.577 (3) ŵ = 0.08 mm1
α = 64.14 (3)°T = 291 K
β = 81.14 (2)°Block, colourless
γ = 86.46 (3)°0.28 × 0.22 × 0.20 mm
V = 1076.2 (4) Å3
Bruker SMART APEX CCD diffractometer4224 independent reflections
Radiation source: sealed tube3065 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
phi and ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −9→9
Tmin = 0.978, Tmax = 0.984k = −13→15
8445 measured reflectionsl = 0→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.07P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3
4224 reflections(Δ/σ)max < 0.001
277 parametersΔρmax = 0.21 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)1.5177 (0.0088) x + 12.2930 (0.0068) y + 6.4535 (0.0131) z = 7.8343 (0.0042)* 0.0161 (0.0015) N1 * -0.0035 (0.0014) C8 * -0.0090 (0.0014) C9 * 0.0172 (0.0014) C10 * -0.0208 (0.0015) C11Rms deviation of fitted atoms = 0.01473.2207 (0.0064) x + 4.3390 (0.0100) y - 6.9725 (0.0098) z = 0.3855 (0.0095)Angle to previous plane (with approximate e.s.d.) = 70.35 (0.09)* 0.0022 (0.0016) C1 * -0.0017 (0.0015) C2 * 0.0004 (0.0014) C3 * 0.0003 (0.0014) C4 * 0.0002 (0.0014) C5 * -0.0015 (0.0015) C6Rms deviation of fitted atoms = 0.00131.5177 (0.0088) x + 12.2930 (0.0068) y + 6.4535 (0.0131) z = 7.8343 (0.0042)Angle to previous plane (with approximate e.s.d.) = 70.35 (0.09)* 0.0161 (0.0015) N1 * -0.0035 (0.0014) C8 * -0.0090 (0.0014) C9 * 0.0172 (0.0014) C10 * -0.0208 (0.0015) C11Rms deviation of fitted atoms = 0.01474.8630 (0.0064) x + 9.1574 (0.0092) y + 8.8027 (0.0100) z = 5.4849 (0.0080)Angle to previous plane (with approximate e.s.d.) = 33.76 (0.10)* 0.0019 (0.0017) C13 * -0.0066 (0.0017) C14 * 0.0011 (0.0016) C15 * 0.0093 (0.0016) C16 * -0.0141 (0.0016) C17 * 0.0086 (0.0017) C18Rms deviation of fitted atoms = 0.00821.5177 (0.0088) x + 12.2930 (0.0068) y + 6.4535 (0.0131) z = 7.8343 (0.0042)Angle to previous plane (with approximate e.s.d.) = 33.76 (0.10)* 0.0161 (0.0015) N1 * -0.0035 (0.0014) C8 * -0.0090 (0.0014) C9 * 0.0172 (0.0014) C10 * -0.0208 (0.0015) C11Rms deviation of fitted atoms = 0.01476.5252 (0.0054) x + 5.2018 (0.0111) y - 0.7915 (0.0119) z = 6.7075 (0.0096)Angle to previous plane (with approximate e.s.d.) = 60.30 (0.09)* -0.0090 (0.0016) C20 * 0.0056 (0.0016) C21 * -0.0033 (0.0016) C22 * 0.0043 (0.0018) C23 * -0.0082 (0.0018) C24 * 0.0105 (0.0016) C25Rms deviation of fitted atoms = 0.0073
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C1−0.1529 (3)0.6731 (2)0.2926 (2)0.0327 (5)
H1A−0.23850.66920.24990.039*
C2−0.1659 (3)0.75660 (19)0.33915 (19)0.0304 (5)
H2A−0.26070.80820.32800.036*
C3−0.0374 (3)0.76321 (19)0.40232 (19)0.0316 (5)
H3A−0.04600.81940.43310.038*
C40.1036 (3)0.6858 (2)0.4193 (2)0.0338 (5)
H4A0.18940.69010.46160.041*
C50.1169 (3)0.6020 (2)0.3733 (2)0.0331 (5)
H5A0.21160.55020.38470.040*
C6−0.0119 (3)0.59562 (19)0.3101 (2)0.0310 (5)
C70.0065 (3)0.50546 (19)0.25793 (19)0.0283 (4)
H7A0.07400.43800.30570.034*
H7B−0.10870.47620.26160.034*
C80.0049 (3)0.6167 (2)0.0375 (2)0.0294 (5)
C90.1367 (3)0.6566 (2)−0.0702 (2)0.0323 (5)
C100.3144 (3)0.61565 (19)−0.03003 (19)0.0294 (5)
H10A0.36420.5601−0.06270.035*
C110.2696 (3)0.5479 (2)0.1037 (2)0.0323 (5)
C120.0939 (3)0.7234 (2)−0.1780 (2)0.0386 (5)
H12A−0.02440.7411−0.18010.046*
C130.2048 (3)0.7736 (2)−0.2946 (2)0.0360 (5)
C140.1571 (3)0.88196 (19)−0.38198 (19)0.0292 (5)
H14A0.05550.9198−0.36650.035*
C150.2610 (3)0.9338 (2)−0.49241 (19)0.0305 (5)
H15A0.22921.0066−0.55060.037*
C160.4072 (3)0.87893 (19)−0.51516 (19)0.0282 (5)
H16A0.47730.9147−0.58870.034*
C170.4552 (3)0.76828 (19)−0.42925 (19)0.0312 (5)
H17A0.55420.7296−0.44720.037*
C180.3577 (3)0.71743 (18)−0.31989 (18)0.0259 (4)
H18A0.39220.6455−0.26190.031*
C190.4489 (3)0.71377 (19)−0.0610 (2)0.0308 (5)
H19A0.55440.6773−0.02770.037*
H19B0.47910.7545−0.14700.037*
C200.3842 (3)0.8034 (2)−0.01497 (19)0.0305 (5)
C210.4122 (3)0.7882 (2)0.09694 (19)0.0324 (5)
H21A0.47340.72160.14320.039*
C220.3524 (3)0.8682 (2)0.14121 (19)0.0294 (5)
H22A0.37110.85420.21750.035*
C230.2649 (3)0.9694 (2)0.0748 (2)0.0384 (5)
C240.2369 (3)0.9850 (2)−0.0369 (2)0.0380 (5)
H24A0.17511.0515−0.08280.046*
C250.2971 (3)0.9064 (2)−0.0814 (2)0.0347 (5)
H25A0.27970.9217−0.15820.042*
C260.2021 (3)1.0583 (2)0.1198 (2)0.0314 (5)
H26A0.14121.12330.07060.038*
N10.0911 (2)0.55614 (17)0.13566 (17)0.0330 (4)
O1−0.15018 (18)0.62882 (12)0.04401 (13)0.0257 (3)
O20.36924 (18)0.49511 (13)0.17642 (13)0.0280 (3)
O30.22208 (19)1.05470 (13)0.21319 (13)0.0301 (4)
O1W0.50000.50000.50000.0428 (12)0.50
H1X0.49810.44010.56750.051*0.25
H1Y0.59580.51910.45270.051*0.25
U11U22U33U12U13U23
C10.0355 (12)0.0359 (12)0.0290 (11)0.0174 (9)−0.0162 (9)−0.0146 (10)
C20.0302 (11)0.0283 (11)0.0261 (10)0.0184 (9)0.0041 (8)−0.0107 (9)
C30.0320 (11)0.0265 (11)0.0258 (11)−0.0154 (9)0.0149 (9)−0.0056 (9)
C40.0251 (11)0.0360 (12)0.0379 (12)−0.0185 (9)0.0152 (9)−0.0176 (10)
C50.0315 (12)0.0270 (11)0.0308 (11)−0.0142 (9)0.0196 (9)−0.0093 (9)
C60.0268 (11)0.0245 (10)0.0327 (11)−0.0018 (8)0.0168 (9)−0.0108 (9)
C70.0262 (10)0.0274 (10)0.0261 (10)−0.0055 (8)0.0002 (8)−0.0073 (9)
C80.0240 (11)0.0340 (11)0.0323 (11)0.0104 (8)−0.0104 (8)−0.0156 (10)
C90.0280 (11)0.0380 (12)0.0297 (11)0.0019 (9)−0.0111 (9)−0.0115 (10)
C100.0274 (11)0.0283 (11)0.0298 (11)0.0118 (8)−0.0133 (9)−0.0086 (9)
C110.0296 (11)0.0326 (11)0.0293 (11)0.0095 (9)−0.0086 (9)−0.0083 (9)
C120.0445 (14)0.0367 (13)0.0304 (12)0.0091 (10)−0.0099 (10)−0.0103 (10)
C130.0341 (12)0.0338 (12)0.0347 (12)0.0122 (10)−0.0040 (9)−0.0117 (10)
C140.0268 (11)0.0302 (11)0.0269 (11)0.0112 (8)−0.0063 (8)−0.0096 (9)
C150.0331 (12)0.0318 (11)0.0217 (10)0.0157 (9)−0.0106 (9)−0.0068 (9)
C160.0264 (10)0.0260 (10)0.0240 (10)−0.0024 (8)0.0000 (8)−0.0040 (8)
C170.0322 (11)0.0299 (11)0.0286 (11)0.0208 (9)−0.0078 (9)−0.0115 (9)
C180.0287 (10)0.0203 (9)0.0275 (11)0.0146 (8)−0.0162 (8)−0.0070 (8)
C190.0325 (12)0.0286 (11)0.0287 (11)0.0041 (9)−0.0116 (9)−0.0083 (9)
C200.0235 (10)0.0394 (12)0.0277 (11)−0.0015 (9)−0.0025 (8)−0.0139 (10)
C210.0262 (11)0.0437 (13)0.0241 (11)0.0082 (9)−0.0086 (8)−0.0113 (10)
C220.0263 (10)0.0330 (11)0.0286 (11)−0.0021 (9)−0.0093 (8)−0.0110 (9)
C230.0428 (13)0.0369 (13)0.0304 (12)0.0062 (10)−0.0019 (10)−0.0118 (10)
C240.0416 (13)0.0356 (12)0.0324 (12)0.0098 (10)−0.0174 (10)−0.0081 (10)
C250.0294 (11)0.0355 (12)0.0326 (12)−0.0022 (9)−0.0094 (9)−0.0068 (10)
C260.0240 (11)0.0283 (11)0.0368 (13)0.0026 (8)0.0029 (9)−0.0119 (10)
N10.0298 (10)0.0319 (10)0.0277 (10)0.0010 (8)−0.0048 (7)−0.0041 (8)
O10.0227 (7)0.0253 (7)0.0284 (8)0.0028 (5)−0.0112 (6)−0.0088 (6)
O20.0210 (7)0.0247 (7)0.0334 (8)0.0082 (6)−0.0069 (6)−0.0079 (6)
O30.0245 (7)0.0294 (8)0.0292 (8)0.0100 (6)0.0058 (6)−0.0103 (6)
O1W0.024 (2)0.036 (3)0.054 (3)0.0020 (19)−0.016 (2)−0.003 (2)
C1—C21.389 (3)C13—C181.402 (3)
C1—C61.388 (3)C14—C151.389 (3)
C1—H1A0.9300C14—H14A0.9300
C2—C31.392 (3)C15—C161.343 (3)
C2—H2A0.9300C15—H15A0.9300
C3—C41.387 (3)C16—C171.401 (3)
C3—H3A0.9300C16—H16A0.9300
C4—C51.389 (3)C17—C181.357 (3)
C4—H4A0.9300C17—H17A0.9300
C5—C61.393 (4)C18—H18A0.9300
C5—H5A0.9300C19—C201.495 (3)
C6—C71.517 (3)C19—H19A0.9700
C7—N11.444 (3)C19—H19B0.9700
C7—H7A0.9700C20—C211.386 (3)
C7—H7B0.9700C20—C251.388 (3)
C8—O11.195 (3)C21—C221.365 (3)
C8—N11.384 (3)C21—H21A0.9300
C8—C91.474 (3)C22—C231.376 (3)
C9—C121.326 (3)C22—H22A0.9300
C9—C101.519 (3)C23—C241.382 (3)
C10—C111.510 (3)C23—C261.476 (3)
C10—C191.531 (3)C24—C251.351 (4)
C10—H10A0.9800C24—H24A0.9300
C11—O21.222 (3)C25—H25A0.9300
C11—N11.388 (3)C26—O31.189 (3)
C12—C131.468 (3)C26—H26A0.9300
C12—H12A0.9300O1W—H1X0.8500
C13—C141.390 (3)O1W—H1Y0.8500
C2—C1—C6119.8 (2)C15—C14—H14A119.9
C2—C1—H1A120.1C13—C14—H14A119.9
C6—C1—H1A120.1C16—C15—C14120.0 (2)
C1—C2—C3120.17 (19)C16—C15—H15A120.0
C1—C2—H2A119.9C14—C15—H15A120.0
C3—C2—H2A119.9C15—C16—C17120.7 (2)
C4—C3—C2119.9 (2)C15—C16—H16A119.6
C4—C3—H3A120.1C17—C16—H16A119.6
C2—C3—H3A120.1C18—C17—C16120.16 (19)
C3—C4—C5120.2 (2)C18—C17—H17A119.9
C3—C4—H4A119.9C16—C17—H17A119.9
C5—C4—H4A119.9C17—C18—C13119.79 (19)
C4—C5—C6119.8 (2)C17—C18—H18A120.1
C4—C5—H5A120.1C13—C18—H18A120.1
C6—C5—H5A120.1C20—C19—C10112.94 (19)
C1—C6—C5120.2 (2)C20—C19—H19A109.0
C1—C6—C7120.6 (2)C10—C19—H19A109.0
C5—C6—C7119.22 (19)C20—C19—H19B109.0
N1—C7—C6112.17 (18)C10—C19—H19B109.0
N1—C7—H7A109.2H19A—C19—H19B107.8
C6—C7—H7A109.2C21—C20—C25116.5 (2)
N1—C7—H7B109.2C21—C20—C19120.9 (2)
C6—C7—H7B109.2C25—C20—C19122.6 (2)
H7A—C7—H7B107.9C22—C21—C20121.8 (2)
O1—C8—N1123.6 (2)C22—C21—H21A119.1
O1—C8—C9128.5 (2)C20—C21—H21A119.1
N1—C8—C9107.90 (18)C21—C22—C23121.0 (2)
C12—C9—C8121.6 (2)C21—C22—H22A119.5
C12—C9—C10130.6 (2)C23—C22—H22A119.5
C8—C9—C10107.59 (18)C22—C23—C24117.3 (2)
C11—C10—C9102.93 (18)C22—C23—C26122.0 (2)
C11—C10—C19110.13 (18)C24—C23—C26120.7 (2)
C9—C10—C19116.51 (18)C25—C24—C23121.8 (2)
C11—C10—H10A109.0C25—C24—H24A119.1
C9—C10—H10A109.0C23—C24—H24A119.1
C19—C10—H10A109.0C24—C25—C20121.5 (2)
O2—C11—N1123.0 (2)C24—C25—H25A119.2
O2—C11—C10127.8 (2)C20—C25—H25A119.2
N1—C11—C10109.08 (18)O3—C26—C23126.1 (2)
C9—C12—C13129.9 (2)O3—C26—H26A117.0
C9—C12—H12A115.0C23—C26—H26A117.0
C13—C12—H12A115.0C8—N1—C11112.37 (18)
C14—C13—C18119.1 (2)C8—N1—C7124.44 (19)
C14—C13—C12118.4 (2)C11—N1—C7123.18 (19)
C18—C13—C12122.4 (2)H1X—O1W—H1Y118.8
C15—C14—C13120.1 (2)
C6—C1—C2—C30.5 (3)C15—C16—C17—C18−2.6 (4)
C1—C2—C3—C4−0.3 (3)C16—C17—C18—C132.5 (4)
C2—C3—C4—C50.1 (3)C14—C13—C18—C17−1.0 (4)
C3—C4—C5—C6−0.1 (3)C12—C13—C18—C17−179.8 (2)
C2—C1—C6—C5−0.4 (3)C11—C10—C19—C20−60.7 (2)
C2—C1—C6—C7−178.8 (2)C9—C10—C19—C2056.0 (3)
C4—C5—C6—C10.3 (3)C10—C19—C20—C2190.7 (3)
C4—C5—C6—C7178.63 (18)C10—C19—C20—C25−90.6 (3)
C1—C6—C7—N184.9 (2)C25—C20—C21—C222.0 (3)
C5—C6—C7—N1−93.5 (2)C19—C20—C21—C22−179.2 (2)
O1—C8—C9—C126.1 (4)C20—C21—C22—C23−1.5 (4)
N1—C8—C9—C12−176.0 (2)C21—C22—C23—C241.4 (4)
O1—C8—C9—C10−178.2 (2)C21—C22—C23—C26−178.8 (2)
N1—C8—C9—C10−0.3 (2)C22—C23—C24—C25−1.9 (4)
C12—C9—C10—C11177.4 (3)C26—C23—C24—C25178.3 (2)
C8—C9—C10—C112.2 (2)C23—C24—C25—C202.5 (4)
C12—C9—C10—C1956.8 (4)C21—C20—C25—C24−2.5 (3)
C8—C9—C10—C19−118.4 (2)C19—C20—C25—C24178.7 (2)
C9—C10—C11—O2178.1 (2)C22—C23—C26—O31.7 (4)
C19—C10—C11—O2−57.0 (3)C24—C23—C26—O3−178.5 (2)
C9—C10—C11—N1−3.5 (2)O1—C8—N1—C11176.0 (2)
C19—C10—C11—N1121.4 (2)C9—C8—N1—C11−2.0 (3)
C8—C9—C12—C13178.6 (2)O1—C8—N1—C7−3.3 (4)
C10—C9—C12—C134.0 (5)C9—C8—N1—C7178.7 (2)
C9—C12—C13—C14−148.5 (3)O2—C11—N1—C8−177.9 (2)
C9—C12—C13—C1830.4 (4)C10—C11—N1—C83.6 (3)
C18—C13—C14—C15−0.5 (4)O2—C11—N1—C71.4 (4)
C12—C13—C14—C15178.4 (2)C10—C11—N1—C7−177.16 (19)
C13—C14—C15—C160.4 (4)C6—C7—N1—C8−86.5 (3)
C14—C15—C16—C171.2 (4)C6—C7—N1—C1194.3 (3)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O2i0.982.563.419 (3)147
C18—H18A···O2i0.932.493.322 (3)149
C19—H19A···O1ii0.972.533.481 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O2i0.982.563.419 (3)147
C18—H18A⋯O2i0.932.493.322 (3)149
C19—H19A⋯O1ii0.972.533.481 (3)168

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  4-(6-Benzyl-7-oxo-1,2,3,4,5,5a,5a(1),6,7,7a,8,12b-dodeca-hydro-benzo[f]cyclo-octa-[cd]isoindol-8-yl)benzonitrile.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-16

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

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