| Literature DB >> 22606114 |
Zhi Li1.
Abstract
The complete mol-ecule of the title compound, C(6)H(12)N(2)O(5), is generated by a rotation about a twofold axis. The conformation along the bond sequence linking the two amino groups is trans-trans-(+)gauche-trans-trans. In the crystal, N-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular architecture.Entities:
Year: 2012 PMID: 22606114 PMCID: PMC3344111 DOI: 10.1107/S1600536812011981
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H12N2O5 | |
| Monoclinic, | Melting point: 428 K |
| Hall symbol: -C 2yc | Mo |
| Cell parameters from 1304 reflections | |
| θ = 3.4–26.0° | |
| µ = 0.13 mm−1 | |
| β = 99.393 (5)° | |
| Plate, colourless | |
| 0.30 × 0.20 × 0.14 mm |
| Bruker SMART CCD area-detector diffractometer | 904 independent reflections |
| Radiation source: fine-focus sealed tube | 748 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.3°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 2358 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 904 reflections | Δρmax = 0.16 e Å−3 |
| 69 parameters | Δρmin = −0.14 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.029 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.25476 (6) | 0.5124 (2) | 0.40946 (8) | 0.0461 (3) | |
| O2 | 0.39925 (5) | 0.69845 (18) | 0.42131 (7) | 0.0374 (3) | |
| O3 | 0.5000 | 0.8767 (2) | 0.2500 | 0.0358 (3) | |
| N1 | 0.37706 (8) | 0.3841 (3) | 0.53985 (10) | 0.0451 (3) | |
| H1A | 0.3429 (12) | 0.260 (3) | 0.5619 (13) | 0.054 (4)* | |
| H1B | 0.4360 (12) | 0.398 (3) | 0.5657 (13) | 0.051 (4)* | |
| C1 | 0.33731 (8) | 0.5279 (2) | 0.45456 (10) | 0.0333 (3) | |
| C2 | 0.35837 (8) | 0.8634 (3) | 0.33006 (11) | 0.0392 (3) | |
| H2A | 0.3086 | 0.9708 | 0.3518 | 0.047* | |
| H2B | 0.3306 | 0.7572 | 0.2678 | 0.047* | |
| C3 | 0.43501 (9) | 1.0321 (3) | 0.29804 (11) | 0.0379 (3) | |
| H3A | 0.4071 | 1.1628 | 0.2455 | 0.045* | |
| H3B | 0.4683 | 1.1206 | 0.3628 | 0.045* |
| O1 | 0.0300 (5) | 0.0575 (6) | 0.0477 (6) | −0.0091 (4) | −0.0029 (4) | 0.0107 (5) |
| O2 | 0.0266 (4) | 0.0479 (5) | 0.0365 (5) | −0.0039 (4) | 0.0020 (4) | 0.0091 (4) |
| O3 | 0.0363 (6) | 0.0328 (6) | 0.0403 (7) | 0.000 | 0.0128 (5) | 0.000 |
| N1 | 0.0301 (6) | 0.0570 (8) | 0.0464 (7) | −0.0046 (5) | 0.0007 (5) | 0.0168 (6) |
| C1 | 0.0277 (6) | 0.0402 (7) | 0.0321 (6) | −0.0025 (5) | 0.0055 (5) | −0.0009 (5) |
| C2 | 0.0309 (6) | 0.0480 (8) | 0.0386 (7) | 0.0031 (5) | 0.0050 (5) | 0.0089 (6) |
| C3 | 0.0376 (7) | 0.0365 (7) | 0.0414 (7) | 0.0034 (5) | 0.0119 (6) | 0.0027 (5) |
| O1—C1 | 1.2191 (15) | N1—H1B | 0.852 (17) |
| O2—C1 | 1.3543 (15) | C2—C3 | 1.4973 (18) |
| O2—C2 | 1.4494 (15) | C2—H2A | 0.9700 |
| O3—C3 | 1.4228 (14) | C2—H2B | 0.9700 |
| O3—C3i | 1.4228 (14) | C3—H3A | 0.9700 |
| N1—C1 | 1.3305 (17) | C3—H3B | 0.9700 |
| N1—H1A | 0.872 (18) | ||
| C1—O2—C2 | 114.33 (9) | C3—C2—H2A | 109.9 |
| C3—O3—C3i | 111.63 (13) | O2—C2—H2B | 109.9 |
| C1—N1—H1A | 117.6 (10) | C3—C2—H2B | 109.9 |
| C1—N1—H1B | 121.0 (11) | H2A—C2—H2B | 108.3 |
| H1A—N1—H1B | 120.9 (15) | O3—C3—C2 | 109.65 (11) |
| O1—C1—N1 | 125.25 (12) | O3—C3—H3A | 109.7 |
| O1—C1—O2 | 122.31 (11) | C2—C3—H3A | 109.7 |
| N1—C1—O2 | 112.44 (11) | O3—C3—H3B | 109.7 |
| O2—C2—C3 | 108.85 (10) | C2—C3—H3B | 109.7 |
| O2—C2—H2A | 109.9 | H3A—C3—H3B | 108.2 |
| C2—O2—C1—O1 | 1.42 (17) | C3i—O3—C3—C2 | 170.41 (12) |
| C2—O2—C1—N1 | −178.66 (11) | O2—C2—C3—O3 | 68.67 (13) |
| C1—O2—C2—C3 | −177.18 (10) |
| H··· | ||||
| N1—H1 | 0.872 (18) | 2.046 (18) | 2.9086 (17) | 169.9 (14) |
| N1—H1 | 0.852 (17) | 2.381 (17) | 3.1763 (17) | 155.6 (14) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.872 (18) | 2.046 (18) | 2.9086 (17) | 169.9 (14) |
| N1—H1 | 0.852 (17) | 2.381 (17) | 3.1763 (17) | 155.6 (14) |
Symmetry codes: (i) ; (ii) .