Literature DB >> 22606114

3-Oxapentane-1,5-diyl dicarbamate.

Zhi Li1.   

Abstract

The complete mol-ecule of the title compound, C(6)H(12)N(2)O(5), is generated by a rotation about a twofold axis. The conformation along the bond sequence linking the two amino groups is trans-trans-(+)gauche-trans-trans. In the crystal, N-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular architecture.

Entities:  

Year:  2012        PMID: 22606114      PMCID: PMC3344111          DOI: 10.1107/S1600536812011981

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For self-assembled mono-layers of alkyl carbamate and alkyl dicarbamate, see: Kim et al. (2003 ▶, 2005a ▶,b ▶). For the synthesis of the title compound, see: Sidney et al. (1965 ▶); Takeuchi & Ninagawa (1971 ▶); Takeuchi (1974 ▶). For a closely related structure and background references, see: Xia et al. (2010 ▶, 2011 ▶).

Experimental

Crystal data

C6H12N2O5 M = 192.18 Monoclinic, a = 14.263 (4) Å b = 5.1412 (15) Å c = 12.276 (4) Å β = 99.393 (5)° V = 888.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 294 K 0.30 × 0.20 × 0.14 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.960, T max = 0.983 2358 measured reflections 904 independent reflections 748 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.084 S = 1.06 904 reflections 69 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812011981/tk5072sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011981/tk5072Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812011981/tk5072Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H12N2O5F(000) = 408
Mr = 192.18Dx = 1.437 Mg m3
Monoclinic, C2/cMelting point: 428 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 14.263 (4) ÅCell parameters from 1304 reflections
b = 5.1412 (15) Åθ = 3.4–26.0°
c = 12.276 (4) ŵ = 0.13 mm1
β = 99.393 (5)°T = 294 K
V = 888.1 (5) Å3Plate, colourless
Z = 40.30 × 0.20 × 0.14 mm
Bruker SMART CCD area-detector diffractometer904 independent reflections
Radiation source: fine-focus sealed tube748 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 26.3°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→17
Tmin = 0.960, Tmax = 0.983k = −6→6
2358 measured reflectionsl = −8→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.0407P)2 + 0.3363P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
904 reflectionsΔρmax = 0.16 e Å3
69 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.029 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.25476 (6)0.5124 (2)0.40946 (8)0.0461 (3)
O20.39925 (5)0.69845 (18)0.42131 (7)0.0374 (3)
O30.50000.8767 (2)0.25000.0358 (3)
N10.37706 (8)0.3841 (3)0.53985 (10)0.0451 (3)
H1A0.3429 (12)0.260 (3)0.5619 (13)0.054 (4)*
H1B0.4360 (12)0.398 (3)0.5657 (13)0.051 (4)*
C10.33731 (8)0.5279 (2)0.45456 (10)0.0333 (3)
C20.35837 (8)0.8634 (3)0.33006 (11)0.0392 (3)
H2A0.30860.97080.35180.047*
H2B0.33060.75720.26780.047*
C30.43501 (9)1.0321 (3)0.29804 (11)0.0379 (3)
H3A0.40711.16280.24550.045*
H3B0.46831.12060.36280.045*
U11U22U33U12U13U23
O10.0300 (5)0.0575 (6)0.0477 (6)−0.0091 (4)−0.0029 (4)0.0107 (5)
O20.0266 (4)0.0479 (5)0.0365 (5)−0.0039 (4)0.0020 (4)0.0091 (4)
O30.0363 (6)0.0328 (6)0.0403 (7)0.0000.0128 (5)0.000
N10.0301 (6)0.0570 (8)0.0464 (7)−0.0046 (5)0.0007 (5)0.0168 (6)
C10.0277 (6)0.0402 (7)0.0321 (6)−0.0025 (5)0.0055 (5)−0.0009 (5)
C20.0309 (6)0.0480 (8)0.0386 (7)0.0031 (5)0.0050 (5)0.0089 (6)
C30.0376 (7)0.0365 (7)0.0414 (7)0.0034 (5)0.0119 (6)0.0027 (5)
O1—C11.2191 (15)N1—H1B0.852 (17)
O2—C11.3543 (15)C2—C31.4973 (18)
O2—C21.4494 (15)C2—H2A0.9700
O3—C31.4228 (14)C2—H2B0.9700
O3—C3i1.4228 (14)C3—H3A0.9700
N1—C11.3305 (17)C3—H3B0.9700
N1—H1A0.872 (18)
C1—O2—C2114.33 (9)C3—C2—H2A109.9
C3—O3—C3i111.63 (13)O2—C2—H2B109.9
C1—N1—H1A117.6 (10)C3—C2—H2B109.9
C1—N1—H1B121.0 (11)H2A—C2—H2B108.3
H1A—N1—H1B120.9 (15)O3—C3—C2109.65 (11)
O1—C1—N1125.25 (12)O3—C3—H3A109.7
O1—C1—O2122.31 (11)C2—C3—H3A109.7
N1—C1—O2112.44 (11)O3—C3—H3B109.7
O2—C2—C3108.85 (10)C2—C3—H3B109.7
O2—C2—H2A109.9H3A—C3—H3B108.2
C2—O2—C1—O11.42 (17)C3i—O3—C3—C2170.41 (12)
C2—O2—C1—N1−178.66 (11)O2—C2—C3—O368.67 (13)
C1—O2—C2—C3−177.18 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1ii0.872 (18)2.046 (18)2.9086 (17)169.9 (14)
N1—H1B···O2iii0.852 (17)2.381 (17)3.1763 (17)155.6 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.872 (18)2.046 (18)2.9086 (17)169.9 (14)
N1—H1B⋯O2ii0.852 (17)2.381 (17)3.1763 (17)155.6 (14)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure of and competitive adsorption in alkyl dicarbamate two-dimensional crystals.

Authors:  Kibum Kim; Katherine E Plass; Adam J Matzger
Journal:  J Am Chem Soc       Date:  2005-04-06       Impact factor: 15.419

3.  Conformational pseudopolymorphism and orientational disorder in two-dimensional alkyl carbamate crystals.

Authors:  Kibum Kim; Katherine E Plass; Adam J Matzger
Journal:  Langmuir       Date:  2005-01-18       Impact factor: 3.882

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