Literature DB >> 22606113

2-[(1-Methyl-1H-pyrrol-2-yl)methyl-idene]propane-dinitrile.

Abdullah M Asiri, Hassan M Faidallah, Shaeel A Al-Thabaiti, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(9)H(7)N(3), the N-bound methyl group and vinyl H atom are syn. The 12 non-H atoms comprising the mol-ecule are essentially coplanar (r.m.s. deviation = 0.071 Å). Supra-molecular tapes feature in the crystal packing, orientated perpendicular to [10-1], and are formed by C-H⋯N inter-actions involving each cyano N atom. The tapes are connected into layers via π-π inter-actions occurring between translationally related pyrrole rings [ring centroid-centroid distance = 3.8754 (10) Å]; the layers stack along the b axis.

Entities:  

Year:  2012        PMID: 22606113      PMCID: PMC3344110          DOI: 10.1107/S160053681201197X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti-cancer effects of related compounds, see: Rostom et al. (2011 ▶). For structural studies of di-carbonitrile compounds, see: Asiri et al. (2011 ▶); Al-Youbi et al. (2012 ▶).

Experimental

Crystal data

C9H7N3 M = 157.18 Triclinic, a = 3.8754 (2) Å b = 8.7795 (5) Å c = 12.1773 (7) Å α = 97.517 (5)° β = 90.962 (5)° γ = 98.689 (5)° V = 405.76 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.25 × 0.15 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.980, T max = 0.996 5871 measured reflections 1866 independent reflections 1463 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.124 S = 1.01 1866 reflections 137 parameters All H-atom parameters refined Δρmax = 0.24 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201197X/bt5851sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201197X/bt5851Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201197X/bt5851Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H7N3Z = 2
Mr = 157.18F(000) = 164
Triclinic, P1Dx = 1.286 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 3.8754 (2) ÅCell parameters from 1724 reflections
b = 8.7795 (5) Åθ = 2.4–27.5°
c = 12.1773 (7) ŵ = 0.08 mm1
α = 97.517 (5)°T = 100 K
β = 90.962 (5)°Prism, light-brown
γ = 98.689 (5)°0.25 × 0.15 × 0.05 mm
V = 405.76 (4) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector1866 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1463 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.039
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.4°
ω scanh = −5→5
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −11→11
Tmin = 0.980, Tmax = 0.996l = −15→15
5871 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124All H-atom parameters refined
S = 1.01w = 1/[σ2(Fo2) + (0.0531P)2 + 0.1622P] where P = (Fo2 + 2Fc2)/3
1866 reflections(Δ/σ)max = 0.001
137 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.29 e Å3
xyzUiso*/Ueq
N10.3583 (3)0.18886 (15)0.26433 (10)0.0202 (3)
N20.2317 (4)0.71488 (16)0.02337 (11)0.0267 (3)
N30.8617 (4)0.78536 (16)0.32981 (11)0.0267 (3)
C10.1644 (5)0.0922 (2)0.16953 (14)0.0250 (4)
C20.4697 (4)0.13538 (19)0.35574 (13)0.0234 (4)
C30.6539 (4)0.25848 (19)0.42647 (13)0.0246 (4)
C40.6548 (4)0.39208 (19)0.37650 (12)0.0220 (4)
C50.4681 (4)0.34899 (17)0.27400 (12)0.0188 (3)
C60.3763 (4)0.43469 (17)0.19062 (12)0.0185 (3)
C70.4655 (4)0.59152 (18)0.18566 (12)0.0190 (3)
C80.3370 (4)0.65898 (17)0.09541 (12)0.0202 (3)
C90.6828 (4)0.69787 (17)0.26673 (12)0.0196 (3)
H110.106 (5)−0.015 (3)0.1842 (17)0.041 (6)*
H120.308 (5)0.090 (2)0.1053 (17)0.038 (5)*
H13−0.050 (5)0.132 (2)0.1524 (16)0.033 (5)*
H20.412 (5)0.027 (2)0.3608 (15)0.025 (4)*
H30.763 (5)0.250 (2)0.4978 (16)0.031 (5)*
H40.769 (5)0.500 (2)0.4051 (14)0.024 (4)*
H60.220 (4)0.378 (2)0.1311 (14)0.020 (4)*
U11U22U33U12U13U23
N10.0225 (7)0.0198 (7)0.0189 (6)0.0031 (5)0.0018 (5)0.0047 (5)
N20.0320 (8)0.0269 (7)0.0215 (7)0.0040 (6)−0.0007 (6)0.0056 (6)
N30.0310 (8)0.0241 (7)0.0245 (7)0.0008 (6)−0.0021 (6)0.0062 (6)
C10.0282 (9)0.0221 (8)0.0235 (8)0.0002 (7)−0.0013 (7)0.0037 (6)
C20.0255 (8)0.0227 (8)0.0244 (8)0.0054 (6)0.0050 (6)0.0097 (6)
C30.0254 (8)0.0301 (9)0.0201 (8)0.0054 (7)0.0008 (6)0.0089 (6)
C40.0209 (8)0.0249 (8)0.0204 (8)0.0024 (6)0.0018 (6)0.0046 (6)
C50.0188 (7)0.0196 (7)0.0182 (7)0.0022 (6)0.0029 (6)0.0045 (6)
C60.0179 (7)0.0213 (8)0.0163 (7)0.0034 (6)0.0018 (6)0.0023 (6)
C70.0195 (7)0.0221 (8)0.0162 (7)0.0042 (6)0.0023 (6)0.0041 (6)
C80.0214 (8)0.0201 (7)0.0191 (8)0.0028 (6)0.0022 (6)0.0023 (6)
C90.0208 (7)0.0201 (7)0.0198 (8)0.0041 (6)0.0037 (6)0.0079 (6)
N1—C21.352 (2)C3—C41.390 (2)
N1—C51.3949 (19)C3—H30.977 (19)
N1—C11.463 (2)C4—C51.410 (2)
N2—C81.157 (2)C4—H41.002 (19)
N3—C91.152 (2)C5—C61.412 (2)
C1—H110.97 (2)C6—C71.378 (2)
C1—H120.97 (2)C6—H60.969 (17)
C1—H130.98 (2)C7—C81.431 (2)
C2—C31.386 (2)C7—C91.431 (2)
C2—H20.952 (19)
C2—N1—C5108.97 (13)C3—C4—C5107.69 (14)
C2—N1—C1124.98 (13)C3—C4—H4127.8 (10)
C5—N1—C1126.02 (13)C5—C4—H4124.5 (10)
N1—C1—H11110.6 (12)N1—C5—C4106.64 (13)
N1—C1—H12109.7 (11)N1—C5—C6120.42 (13)
H11—C1—H12106.9 (17)C4—C5—C6132.91 (14)
N1—C1—H13111.0 (11)C7—C6—C5128.23 (14)
H11—C1—H13109.4 (17)C7—C6—H6115.2 (10)
H12—C1—H13109.2 (16)C5—C6—H6116.5 (10)
N1—C2—C3109.17 (14)C6—C7—C8120.18 (13)
N1—C2—H2118.3 (11)C6—C7—C9124.54 (13)
C3—C2—H2132.5 (11)C8—C7—C9115.29 (13)
C2—C3—C4107.53 (14)N2—C8—C7179.15 (16)
C2—C3—H3125.1 (11)N3—C9—C7178.23 (16)
C4—C3—H3127.3 (11)
C5—N1—C2—C3−0.11 (17)C1—N1—C5—C63.9 (2)
C1—N1—C2—C3177.99 (14)C3—C4—C5—N1−0.10 (17)
N1—C2—C3—C40.05 (18)C3—C4—C5—C6177.75 (16)
C2—C3—C4—C50.04 (18)N1—C5—C6—C7−178.89 (14)
C2—N1—C5—C40.13 (17)C4—C5—C6—C73.5 (3)
C1—N1—C5—C4−177.94 (14)C5—C6—C7—C8−177.93 (14)
C2—N1—C5—C6−178.05 (13)C5—C6—C7—C91.6 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3···N3i0.976 (19)2.612 (19)3.579 (2)170.8 (16)
C6—H6···N2ii0.969 (17)2.515 (17)3.469 (2)167.8 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯N3i0.976 (19)2.612 (19)3.579 (2)170.8 (16)
C6—H6⋯N2ii0.969 (17)2.515 (17)3.469 (2)167.8 (14)

Symmetry codes: (i) ; (ii) .

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2.  3-Amino-1-(4-meth-oxy-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

3.  3-Amino-1-(thio-phen-2-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

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