Literature DB >> 22606107

1-(2-Hy-droxy-eth-yl)-3-phenyl-thio-urea.

Antar A Abdelhamid, Shaaban K Mohamed, Mehmet Akkurt, Kuldip Singh, Herman Potgieter.   

Abstract

The title compound, C(9)H(12)N(2)OS, was obtained unexpectedly in a multicomponent reaction of an equimolar ratio of n class="Chemical">phenyl isothio-cyanate, malononitrile and amino-ethanol. The -C(H(2))-N(H)-(C=S)-N(H)- methyl-thio-urea-methane group is almost normal to the phenyl ring, with a dihedral angle of 71.13 (9)°. The N-C-C-O torsion angle is 72.8 (2)°. In the crystal, mol-ecules are connected by N-H⋯O, O-H⋯S and N-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22606107      PMCID: PMC3344104          DOI: 10.1107/S160053681201183X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­ureas, see: Kilcigil & Altanlar (2006 ▶); Struga et al. (2007 ▶); Desai et al. (2007 ▶); Patel et al. (2007 ▶); Arslan et al. (2006 ▶); Katritzky & Gordeev (1991 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For n class="Chemical">hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶).

Experimental

Crystal data

C9H12N2OS M = 196.28 Tetragonal, a = 26.170 (4) Å c = 5.7775 (16) Å V = 3956.8 (16) Å3 Z = 16 Mo Kα radiation μ = 0.29 mm−1 T = 150 K 0.27 × 0.09 × 0.08 mm

Data collection

Bruker APEX 2K CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.926, T max = 0.977 15367 measured reflections 2056 independent reflections 1540 reflections with I > 2σ(I) R int = 0.095

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.110 S = 0.98 2056 reflections 119 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201183X/rk2342sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201183X/rk2342Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201183X/rk2342Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12N2OSDx = 1.318 Mg m3
Mr = 196.28Melting point: 393 K
Tetragonal, I41/aMo Kα radiation, λ = 0.71073 Å
Hall symbol: -I 4adCell parameters from 800 reflections
a = 26.170 (4) Åθ = 3.5–28.2°
c = 5.7775 (16) ŵ = 0.29 mm1
V = 3956.8 (16) Å3T = 150 K
Z = 16Needle, colourless
F(000) = 16640.27 × 0.09 × 0.08 mm
Bruker APEX 2K CCD diffractometer2056 independent reflections
Radiation source: fine-focus sealed tube1540 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.095
φ and ω scansθmax = 26.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −32→32
Tmin = 0.926, Tmax = 0.977k = −32→32
15367 measured reflectionsl = −7→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0501P)2] where P = (Fo2 + 2Fc2)/3
2056 reflections(Δ/σ)max = 0.001
119 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All s.u.'s are estimated from the variances of the (full) variance-covariance matrix. The cell s.u.'s are taken into account in the estimation of distances, angles and torsion angles.
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating R-factor etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.53773 (2)0.07294 (2)0.52460 (10)0.0281 (2)
O10.56205 (6)0.17228 (6)−0.1675 (3)0.0322 (5)
N10.45696 (7)0.04810 (6)0.2790 (3)0.0269 (6)
N20.49000 (6)0.12770 (6)0.1987 (3)0.0215 (5)
C10.41711 (9)0.01902 (9)−0.0757 (4)0.0352 (8)
C20.37649 (9)0.01894 (10)−0.2287 (4)0.0416 (9)
C30.33488 (9)0.04979 (9)−0.1906 (4)0.0365 (8)
C40.33371 (9)0.08094 (10)−0.0010 (4)0.0394 (9)
C50.37390 (9)0.08096 (9)0.1544 (4)0.0346 (8)
C60.41558 (8)0.05020 (8)0.1157 (4)0.0237 (7)
C70.49204 (8)0.08449 (8)0.3204 (4)0.0216 (7)
C80.52638 (8)0.16964 (8)0.2207 (4)0.0231 (7)
C90.57332 (8)0.16375 (9)0.0697 (4)0.0282 (7)
H10.44530−0.00190−0.102000.0420*
H1A0.459600.020500.359000.0320*
H1B0.554200.14510−0.228900.0480*
H20.37740−0.00210−0.358200.0500*
H2A0.465500.131100.100500.0260*
H30.307600.04950−0.293600.0440*
H40.305800.102200.023700.0470*
H50.372700.101700.284900.0410*
H8A0.537100.172100.381000.0280*
H8B0.509300.201300.180600.0280*
H9A0.599200.187900.119500.0340*
H9B0.587000.129600.088400.0340*
U11U22U33U12U13U23
S10.0314 (3)0.0206 (3)0.0322 (3)−0.0001 (2)−0.0121 (3)0.0010 (2)
O10.0448 (10)0.0284 (9)0.0234 (9)−0.0100 (8)0.0032 (8)−0.0016 (7)
N10.0285 (10)0.0191 (9)0.0332 (11)−0.0045 (8)−0.0107 (8)0.0074 (8)
N20.0214 (9)0.0219 (9)0.0211 (10)−0.0023 (7)−0.0036 (7)0.0015 (7)
C10.0253 (12)0.0417 (15)0.0385 (14)0.0047 (11)−0.0008 (11)−0.0120 (12)
C20.0388 (15)0.0516 (16)0.0343 (15)0.0003 (12)−0.0058 (12)−0.0151 (12)
C30.0292 (13)0.0402 (15)0.0402 (15)−0.0034 (11)−0.0118 (11)0.0027 (12)
C40.0291 (13)0.0384 (14)0.0508 (17)0.0090 (11)−0.0089 (12)−0.0073 (12)
C50.0362 (14)0.0298 (13)0.0377 (15)0.0049 (11)−0.0063 (11)−0.0102 (11)
C60.0233 (11)0.0201 (11)0.0278 (12)−0.0053 (9)−0.0038 (9)0.0052 (9)
C70.0233 (11)0.0191 (11)0.0223 (12)0.0014 (9)0.0007 (9)−0.0033 (9)
C80.0291 (12)0.0188 (11)0.0214 (12)−0.0039 (9)−0.0015 (9)−0.0001 (9)
C90.0267 (12)0.0325 (13)0.0255 (13)−0.0068 (10)−0.0002 (10)−0.0011 (10)
S1—C71.707 (2)C4—C51.383 (3)
O1—C91.420 (3)C5—C61.374 (3)
O1—H1B0.8200C8—C91.515 (3)
N1—C61.437 (3)C1—H10.9300
N1—C71.344 (3)C2—H20.9300
N2—C71.333 (3)C3—H30.9300
N2—C81.459 (3)C4—H40.9300
N1—H1A0.8600C5—H50.9300
N2—H2A0.8600C8—H8A0.9700
C1—C21.383 (3)C8—H8B0.9700
C1—C61.375 (3)C9—H9A0.9700
C2—C31.373 (3)C9—H9B0.9700
C3—C41.366 (3)
C9—O1—H1B109.00C2—C1—H1120.00
C6—N1—C7127.18 (17)C6—C1—H1120.00
C7—N2—C8124.50 (17)C1—C2—H2120.00
C6—N1—H1A116.00C3—C2—H2120.00
C7—N1—H1A116.00C2—C3—H3120.00
C8—N2—H2A118.00C4—C3—H3120.00
C7—N2—H2A118.00C3—C4—H4120.00
C2—C1—C6119.5 (2)C5—C4—H4120.00
C1—C2—C3120.4 (2)C4—C5—H5120.00
C2—C3—C4119.8 (2)C6—C5—H5120.00
C3—C4—C5120.3 (2)N2—C8—H8A109.00
C4—C5—C6119.9 (2)N2—C8—H8B109.00
N1—C6—C1118.90 (19)C9—C8—H8A109.00
C1—C6—C5120.1 (2)C9—C8—H8B109.00
N1—C6—C5120.9 (2)H8A—C8—H8B108.00
S1—C7—N1118.42 (16)O1—C9—H9A109.00
N1—C7—N2118.68 (19)O1—C9—H9B109.00
S1—C7—N2122.89 (16)C8—C9—H9A109.00
N2—C8—C9113.75 (18)C8—C9—H9B109.00
O1—C9—C8111.81 (17)H9A—C9—H9B108.00
C6—N1—C7—S1179.93 (17)C2—C1—C6—N1177.1 (2)
C7—N1—C6—C1111.2 (3)C2—C1—C6—C50.1 (3)
C7—N1—C6—C5−71.9 (3)C1—C2—C3—C40.3 (4)
C6—N1—C7—N2−0.8 (3)C2—C3—C4—C5−1.0 (4)
C7—N2—C8—C986.7 (3)C3—C4—C5—C61.2 (4)
C8—N2—C7—S11.1 (3)C4—C5—C6—N1−177.6 (2)
C8—N2—C7—N1−178.12 (19)C4—C5—C6—C1−0.7 (3)
C6—C1—C2—C30.1 (4)N2—C8—C9—O172.8 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···S1i0.862.543.3676 (18)163
O1—H1B···S1ii0.822.403.2137 (18)169
N2—H2A···O1iii0.862.152.875 (2)142
C8—H8A···S10.972.723.094 (2)103
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯S1i0.862.543.3676 (18)163
O1—H1B⋯S1ii0.822.403.2137 (18)169
N2—H2A⋯O1iii0.862.152.875 (2)142

Symmetry codes: (i) ; (ii) ; (iii) .

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