Literature DB >> 22605552

Crystal structure of (Gly-Pro-Hyp)(9) : implications for the collagen molecular model.

Kenji Okuyama1, Keita Miyama, Kazunori Mizuno, Hans Peter Bächinger.   

Abstract

Collagens have long been believed to adopt a triple-stranded molecular structure with a 10/3 symmetry (ten triplet units in three turns) and an axial repeat of 29 Å. This belief even persisted after an alternative structure with a 7/2 symmetry (seven triplet units in two turns) with an axial repeat of 20 Å had been proposed. The uncertainty regarding the helical symmetry of collagens is attributed to inadequate X-ray fiber diffraction data. Therefore, for better understanding of the collagen helix, single-crystal analyses of peptides with simplified characteristic amino acid sequences and similar compositions to collagens have long been awaited. Here we report the crystal structure of (Gly-Pro-Hyp)(9) peptide at a resolution of 1.45 Å. The repeating unit of this peptide, Gly-Pro-Hyp, is the most typical sequence present in collagens, and it has been used as a basic repeating unit in fiber diffraction analyses of collagen. The (Gly-Pro-Hyp)(9) peptide adopts a triple-stranded structure with an average helical symmetry close to the ideal 7/2 helical model for collagen. This observation strongly suggests that the average molecular structure of collagen is not the accepted Rich and Crick 10/3 helical model but is a 7/2 helical conformation.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22605552     DOI: 10.1002/bip.22048

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  19 in total

1.  Stabilization of collagen-model, triple-helical peptides for in vitro and in vivo applications.

Authors:  Manishabrata Bhowmick; Gregg B Fields
Journal:  Methods Mol Biol       Date:  2013

2.  Empirical estimation of local dielectric constants: Toward atomistic design of collagen mimetic peptides.

Authors:  Douglas H Pike; Vikas Nanda
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

3.  Molecular modeling of immersion optical clearing of biological tissues.

Authors:  Kirill V Berezin; Konstantin N Dvoretski; Maria L Chernavina; Anatoliy M Likhter; Vladimir V Smirnov; Ilmira T Shagautdinova; Ekaterina M Antonova; Ekaterina Yu Stepanovich; Elena A Dzhalmuhambetova; Valery V Tuchin
Journal:  J Mol Model       Date:  2018-01-26       Impact factor: 1.810

Review 4.  Production of protein-based polymers in Pichia pastoris.

Authors:  Marc W T Werten; Gerrit Eggink; Martien A Cohen Stuart; Frits A de Wolf
Journal:  Biotechnol Adv       Date:  2019-03-19       Impact factor: 14.227

5.  Inhibition of Mammalian Glycoprotein YKL-40: IDENTIFICATION OF THE PHYSIOLOGICAL LIGAND.

Authors:  Abhishek A Kognole; Christina M Payne
Journal:  J Biol Chem       Date:  2017-01-04       Impact factor: 5.157

6.  Molecular Engineering of Rigid Hydrogels Co-assembled from Collagenous Helical Peptides Based on a Single Triplet Motif.

Authors:  Santu Bera; Pierre-Andre Cazade; Shayon Bhattacharya; Sarah Guerin; Moumita Ghosh; Francesca Netti; Damien Thompson; Lihi Adler-Abramovich
Journal:  ACS Appl Mater Interfaces       Date:  2022-10-07       Impact factor: 10.383

7.  Structural basis of collagen recognition by human osteoclast-associated receptor and design of osteoclastogenesis inhibitors.

Authors:  Joel Haywood; Jianxun Qi; Chun-Chi Chen; Guangwen Lu; Yingxia Liu; Jinghua Yan; Yi Shi; George F Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-07       Impact factor: 11.205

8.  Antibody responses to collagen peptides and streptococcal collagen-like 1 proteins in acute rheumatic fever patients.

Authors:  Devaki H Pilapitiya; Paul W R Harris; Paulina Hanson-Manful; Reuben McGregor; Renata Kowalczyk; Jeremy M Raynes; Lauren H Carlton; Renwick C J Dobson; Michael G Baker; Margaret Brimble; Slawomir Lukomski; Nicole J Moreland
Journal:  Pathog Dis       Date:  2021-07-09       Impact factor: 3.166

9.  Decellularized pericardium tissues at increasing glucose, galactose and ribose concentrations and at different time points studied using scanning X-ray microscopy.

Authors:  Cinzia Giannini; Liberato De Caro; Alberta Terzi; Luca Fusaro; Davide Altamura; Ana Diaz; Rocco Lassandro; Francesca Boccafoschi; Oliver Bunk
Journal:  IUCrJ       Date:  2021-06-03       Impact factor: 4.769

Review 10.  Polyproline and triple helix motifs in host-pathogen recognition.

Authors:  Rita Berisio; Luigi Vitagliano
Journal:  Curr Protein Pept Sci       Date:  2012-12       Impact factor: 3.272

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